chr3 : 101,562,320 – 101,562,667
347 bp 111 TFs 1 linked gene
This 347 bp open chromatin element is linked to TRMT10C and is bound by 111 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRMT10C 453 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:101,557,320 – 101,567,667
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 274 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 95 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 189 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 64 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 67 bp overlap
BRCA1 1 dataset
ChIP HepG2 ENCFF585LUC 110 bp overlap
BRD2 13 datasets
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 56 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 111 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 53 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 53 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 83 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 83 bp overlap
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 57 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 85 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 63 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 55 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 212 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 62 bp overlap
BRD4 17 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 64 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 52 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 107 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 150 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 76 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 108 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 84 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 130 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 101 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 94 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 94 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 60 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 69 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 193 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 53 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 68 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 56 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 163 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 57 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 68 bp overlap
CTCF 2 datasets
ChIP PC-9 ENCFF539ULB 214 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 93 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 79 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 347 bp overlap
E2F6 1 dataset
ChIP K562 ENCFF136LTS 234 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 85 bp overlap
EGR1 3 datasets
ChIP GM12878 ENCFF092DJY 198 bp overlap
ChIP K562 ENCFF006PJY 215 bp overlap
ChIP K562 ENCFF895KGN 297 bp overlap
EZH2 2 datasets
ChIP neural progenitor cell ENCFF472NFV 120 bp overlap
ChIP neural progenitor cell ENCFF472NFV 347 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 99 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 66 bp overlap
ChIP GM12878 ENCFF264DJE 339 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 185 bp overlap
ChIP K-562 ENCSR138YYY.GABPB1.K-562 50 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 246 bp overlap
GATA6 1 dataset
ChIP OACP4-C GSE132680.GATA6.OACP4-C 98 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 176 bp overlap
HDAC1 3 datasets
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 60 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 116 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 347 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF032DND 117 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 144 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 142 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 57 bp overlap
JRK 1 dataset
ChIP HepG2 ENCFF350YLO 97 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 242 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 347 bp overlap
KDM5A 3 datasets
ChIP A549 ENCFF513MKL 311 bp overlap
ChIP HepG2 ENCFF105YGO 82 bp overlap
ChIP WA01 ENCSR160ZLP.KDM5A.WA01 64 bp overlap
KLF9 1 dataset
ChIP HEK293 ENCFF588INF 285 bp overlap
KMT2A 9 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 347 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 65 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 136 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 81 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 126 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 51 bp overlap
ChIP MOLM-13_HOTTIP-KO GSE114981.KMT2A.MOLM-13_HOTTIP-KO 132 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 138 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 137 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 57 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 80 bp overlap
LIN54 1 dataset
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 56 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 250 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 56 bp overlap
ChIP WTC11 ENCFF223QFY 81 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 153 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 109 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 180 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 146 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 293 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 57 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 85 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 257 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 239 bp overlap
ChIP K562 ENCFF731XJJ 326 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 80 bp overlap
MLLT3 1 dataset
ChIP HSPC_MLLT3-virus GSE111482.MLLT3.HSPC_MLLT3-virus 60 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 58 bp overlap
MXD4 1 dataset
ChIP HepG2 ENCFF308ELA 73 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 104 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 56 bp overlap
MYC 6 datasets
ChIP MIA-PaCa-2_CM GSE143804.MYC.MIA-PaCa-2_CM 108 bp overlap
ChIP MIA-PaCa-2_DMEM GSE143804.MYC.MIA-PaCa-2_DMEM 53 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 105 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 52 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 221 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 54 bp overlap
MYCN 4 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 226 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 347 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 347 bp overlap
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 79 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 251 bp overlap
NELFA 3 datasets
ChIP HeLa_1h-Flavo-0-H2O2 GSE93931.NELFA.HeLa_1h-Flavo-0-H2O2 198 bp overlap
ChIP HeLa_40min-Flavo-PJ34-10min-H2O2 GSE93931.NELFA.HeLa_40min-Flavo-PJ34-10min-H2O2 165 bp overlap
ChIP HeLa_Flavo-PJ34-10min-H2O2 GSE100742.NELFA.HeLa_Flavo-PJ34-10min-H2O2 165 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 81 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 91 bp overlap
ChIP D283-Med GSE92582.NEUROD1.D283-Med 54 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 76 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 122 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 100 bp overlap
NKRF 1 dataset
ChIP GM12878 ENCFF392NLB 62 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 231 bp overlap
ChIP K562 ENCFF750AXF 347 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 51 bp overlap
NRF1 6 datasets
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 77 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 87 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 83 bp overlap
ChIP K562 ENCFF130SGK 260 bp overlap
ChIP K562 ENCFF689EWI 178 bp overlap
ChIP K562 ENCFF791UHF 310 bp overlap
PHF8 3 datasets
ChIP A-549 ENCSR541AOQ.PHF8.A-549 124 bp overlap
ChIP A549 ENCFF815XUD 202 bp overlap
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 87 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 149 bp overlap
PKNOX1 7 datasets
ChIP GM12878 ENCFF589FCY 158 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 158 bp overlap
ChIP HEK293T ENCFF174WDB 121 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 119 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 88 bp overlap
ChIP K562 ENCFF236IUS 165 bp overlap
ChIP MCF-7 ENCFF116OCS 233 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 78 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF955VIQ 249 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 347 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 288 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 150 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCFF916JXQ 247 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 325 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 325 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 68 bp overlap
SMAD7 1 dataset
ChIP HepG2 ENCFF850FXR 347 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 347 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 66 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 104 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 91 bp overlap
SP140L 1 dataset
ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 58 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 191 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 347 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 347 bp overlap
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 347 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCFF556LCN 323 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 108 bp overlap
TEAD1 1 dataset
ChIP HCT-116 GSE108920.TEAD1.HCT-116 179 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFDP1 2 datasets
ChIP K562 ENCFF794ZXJ 71 bp overlap
ChIP K562 ENCFF794ZXJ 347 bp overlap
TP53 1 dataset
ChIP IMR-90_SENE GSE53491.TP53.IMR-90_SENE 59 bp overlap
USF1 1 dataset
ChIP H1 ENCFF090WVU 225 bp overlap
WDR5 1 dataset
ChIP breast-cancer_shLuc GSE113279.WDR5.breast-cancer_shLuc 275 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 347 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 95 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 60 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 107 bp overlap
ZFX 4 datasets
ChIP HCT116 ENCFF324IZY 74 bp overlap
ChIP HEK293T ENCFF402JZW 213 bp overlap
ChIP K562 ENCFF169LZT 77 bp overlap
ChIP MCF-7 ENCFF009NAJ 123 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 101 bp overlap
ZMYM3 3 datasets
ChIP HepG2 ENCFF408KTI 324 bp overlap
ChIP K562 ENCFF361LXT 347 bp overlap
ChIP K562 ENCFF361LXT 149 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF333 1 dataset
ChIP HepG2 ENCFF038JAL 100 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 347 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCFF944VMC 165 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 76 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 91 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 178 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 67 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ChIP HepG2 ENCFF007NNM 224 bp overlap
ZNF569 1 dataset
ChIP HepG2 ENCFF594IPO 204 bp overlap
ZNF605 1 dataset
ChIP HepG2 ENCFF640NFJ 148 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 310 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZSCAN29 1 dataset
ChIP HepG2 ENCFF212SBM 102 bp overlap
ZSCAN31 1 dataset
ChIP HepG2 ENCFF066FRL 57 bp overlap
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