chr1 : 50,416,739 50,417,464
725 bp 115 TFs 3 linked genes
This 725 bp open chromatin element is linked to DMRTA2, ENSG00000284700, and FAF1 and is bound by 115 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
DMRTA2 4.2 kb Proximal Proximity
ENSG00000284700 6.1 kb Proximal Proximity
FAF1 543.3 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,411,739 – 50,422,464
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 328 bp overlap
ChIP H1 ENCFF399KAM 605 bp overlap
ChIP H1 ENCFF399KAM 705 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 725 bp overlap
BRD2 5 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 141 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 310 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 725 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 725 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 725 bp overlap
BRD4 5 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 50 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 126 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 190 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 725 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 235 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CBFA2T2 2 datasets
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 195 bp overlap
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 301 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 587 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 233 bp overlap
ChIP hESC GSE133412.CBX7.hESC 254 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 218 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 249 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF128BID 323 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 329 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 166 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 324 bp overlap
CTCF 5 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 238 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 171 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF274GAT 119 bp overlap
ChIP BLaER1 ENCFF335XTP 234 bp overlap
ChIP BLaER1 ENCFF364PUR 265 bp overlap
DUXA 2 datasets
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
E2F6 3 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 259 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 542 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 141 bp overlap
EGR1 3 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 340 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 277 bp overlap
ELK1 1 dataset
ChIP WA01 ERP002417.ELK1.WA01 216 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 315 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 212 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 205 bp overlap
EZH2 29 datasets
ChIP A673 ENCFF790MVL 725 bp overlap
ChIP A673 ENCFF790MVL 81 bp overlap
ChIP A673 ENCFF955JRZ 725 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 425 bp overlap
ChIP GM23248 ENCFF404ZHM 207 bp overlap
ChIP GM23248 ENCFF506FWX 176 bp overlap
ChIP GM23338 ENCFF613YON 725 bp overlap
ChIP GM23338 ENCFF886DXX 314 bp overlap
ChIP H1 ENCFF232NZA 725 bp overlap
ChIP SK-N-SH ENCFF657FZK 153 bp overlap
ChIP SK-N-SH ENCFF657FZK 366 bp overlap
ChIP T98G GSE112240.EZH2.T98G 616 bp overlap
ChIP astrocyte ENCFF365JTP 725 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 725 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 725 bp overlap
ChIP fibroblast of lung ENCFF479BAW 539 bp overlap
ChIP fibroblast of lung ENCFF479BAW 155 bp overlap
ChIP hepatocyte ENCFF118DKH 98 bp overlap
ChIP hepatocyte ENCFF552DZB 725 bp overlap
ChIP keratinocyte ENCFF070STK 172 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 454 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 483 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 725 bp overlap
ChIP myotube ENCFF857GWB 439 bp overlap
ChIP neural cell ENCFF610EPB 323 bp overlap
ChIP neural progenitor cell ENCFF018MKA 725 bp overlap
ChIP neural progenitor cell ENCFF472NFV 725 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 414 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 60 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FOXA1 1 dataset
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 188 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 329 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 187 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 269 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 222 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 291 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 366 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 270 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 725 bp overlap
ChIP hESC GSE133412.JARID2.hESC 236 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 461 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 393 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 510 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 583 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 210 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 500 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 433 bp overlap
ChIP H1 ENCFF078LED 640 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 684 bp overlap
Lhx1 2 datasets
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Motif DE_24h DE_24h-Lhx1_MA1518.3 10 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 191 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 256 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 184 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 171 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 271 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 477 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 688 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NFKB1 2 datasets
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
Motif DE_24h DE_24h-NFKB1_MA0105.4 13 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 280 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PAX4 2 datasets
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
Motif DE_24h DE_24h-PAX4_MA0068.2 8 bp overlap
PCGF2 3 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 205 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 581 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 264 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 270 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 285 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 725 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 637 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 320 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 289 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 191 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 201 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 153 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 160 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 725 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 279 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 3 datasets
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 174 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 184 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 176 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 185 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 452 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 725 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 330 bp overlap
RUNX1 2 datasets
ChIP THP-1 GSE79899.RUNX1.THP-1 72 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 182 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 289 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 332 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 422 bp overlap
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 64 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 199 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 123 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 430 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 720 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 592 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 520 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 305 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 425 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 402 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 459 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 174 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 212 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 137 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 183 bp overlap
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 252 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SP1 4 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 387 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 212 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 253 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 281 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 293 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 54 bp overlap
SUZ12 17 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 725 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 211 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 220 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 217 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 222 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 234 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 183 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 197 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 52 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 222 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 507 bp overlap
ChIP NT2/D1 ENCFF574SXS 588 bp overlap
ChIP NT2/D1 ENCFF574SXS 317 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 658 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 629 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 473 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 713 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 379 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
USF1 2 datasets
ChIP WA01 ENCSR000BIU.USF1.WA01 76 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 149 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 90 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 412 bp overlap
ZBED4 2 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 620 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 505 bp overlap
ZNF610 5 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif DE_24h DE_24h-ZNF610_MA1713.2 10 bp overlap
Motif DE_24h DE_24h-ZNF610_MA1713.2 10 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap