chr2 : 166,372,803 – 166,373,404
601 bp 122 TFs 1 linked gene
This 601 bp open chromatin element is linked to SCN9A and is bound by 122 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SCN9A 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:166,367,803 – 166,378,404
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 294 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 465 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 324 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF604FPV 121 bp overlap
ATF4 1 dataset
ChIP K562 ENCFF674KTF 105 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 140 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 179 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 221 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 157 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 148 bp overlap
DMAP1 1 dataset
ChIP HepG2 ENCFF247MSU 75 bp overlap
DMRTA1 3 datasets
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 79 bp overlap
FOXA1 5 datasets
ChIP A-549 ENCSR000BRD.FOXA1.A-549 141 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 169 bp overlap
ChIP HepG2 ENCFF207NVJ 160 bp overlap
ChIP HepG2 ENCFF740VZW 213 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 216 bp overlap
FOXA2 6 datasets
ChIP DE DE-FOXA2-1 250 bp overlap
ChIP HepG2 ENCFF533COJ 94 bp overlap
ChIP HepG2 ENCFF570ABM 216 bp overlap
ChIP liver ENCFF888VJF 276 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 180 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 240 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 2 datasets
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF245WKP 197 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF750ZWM 230 bp overlap
HDAC2 1 dataset
ChIP K562 ENCFF744ALD 201 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
JUN::JUNB 1 dataset
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 195 bp overlap
KDM5A 2 datasets
ChIP HepG2 ENCFF105YGO 62 bp overlap
ChIP HepG2 ENCFF105YGO 275 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 208 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 156 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 575 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 410 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 456 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 428 bp overlap
ChIP hESC GSE18292.NANOG.hESC 176 bp overlap
ChIP hESC GSE18292.NANOG.hESC 117 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 127 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 117 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 175 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 151 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 130 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 152 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 3 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 202 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 9 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 274 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 571 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 249 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 209 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 119 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 374 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 219 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 60 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 387 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 349 bp overlap
RBFOX2 1 dataset
ChIP K-562 GSE120104.RBFOX2.K-562 224 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Rhox11 2 datasets
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Motif ES_0h ES_0h-Rhox11_MA0629.2 9 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 509 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 209 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 200 bp overlap
SMARCC1 2 datasets
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 262 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 276 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
SOX18 4 datasets
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
ChIP HepG2 ENCFF348QIP 464 bp overlap
ChIP HepG2 ENCFF348QIP 251 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 244 bp overlap
ChIP hESC GSE18292.SOX2.hESC 179 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 393 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 82 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 243 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 129 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 106 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 343 bp overlap
Sox1 1 dataset
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 174 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 82 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 82 bp overlap
TP63 3 datasets
Motif DE_12h DE_12h-TP63_MA0525.2 18 bp overlap
Motif ES_0h ES_0h-TP63_MA0525.2 18 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 184 bp overlap
TP73 2 datasets
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 202 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 111 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 77 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 58 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 419 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 211 bp overlap
ZNF189 3 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ChIP HEK293 ENCFF638TIB 489 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 328 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 207 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap
ZNF213 1 dataset
ChIP HEK293 ENCSR295GRB.ZNF213.HEK293 172 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 85 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 150 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 223 bp overlap
ZNF384 2 datasets
ChIP K-562 ENCSR000EFP.ZNF384.K-562 207 bp overlap
ChIP K562 ENCFF365NXQ 233 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 444 bp overlap
ZNF513 2 datasets
ChIP HEK293 ENCFF457TCC 272 bp overlap
ChIP HEK293 ENCSR503DPC.ZNF513.HEK293 422 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 170 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 80 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 551 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 63 bp overlap
ZNF8 2 datasets
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
Motif ES_0h ES_0h-ZNF8_MA1718.1 20 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 58 bp overlap
ZNF878 1 dataset
ChIP HepG2 ENCFF165VOD 541 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
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