chr1 : 39,692,486 39,692,694
208 bp 93 TFs 1 linked gene
This 208 bp open chromatin element is linked to HPCAL4 and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HPCAL4 1.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:39,687,486 – 39,697,694
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 137 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 137 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 168 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 208 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 208 bp overlap
ChIP H1 ENCFF399KAM 208 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 144 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 87 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 138 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 76 bp overlap
BRD4 6 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 106 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 208 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 206 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 76 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 120 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 121 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 208 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 173 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 208 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 208 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 160 bp overlap
CREB1 2 datasets
ChIP WA01 ENCSR000BSN.CREB1.WA01 110 bp overlap
ChIP WTC11 ENCFF297VCI 178 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 208 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 95 bp overlap
E2F1 1 dataset
ChIP WTC11 ENCFF994SXO 192 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 208 bp overlap
E2F6 5 datasets
ChIP A-549 ENCSR000BTC.E2F6.A-549 134 bp overlap
ChIP H1 ENCFF785DWK 181 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 118 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 181 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 208 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 86 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 88 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 77 bp overlap
ESR1 7 datasets
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 208 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 208 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 208 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 96 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 204 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 208 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 182 bp overlap
EZH2 28 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 208 bp overlap
ChIP A673 ENCFF790MVL 51 bp overlap
ChIP A673 ENCFF955JRZ 208 bp overlap
ChIP GM23338 ENCFF613YON 72 bp overlap
ChIP GM23338 ENCFF886DXX 131 bp overlap
ChIP GM23338 ENCFF886DXX 156 bp overlap
ChIP H1 ENCFF232NZA 208 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 208 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 208 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 208 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 178 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 116 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 189 bp overlap
ChIP astrocyte ENCFF365JTP 208 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 72 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 208 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 186 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 208 bp overlap
ChIP fibroblast of lung ENCFF479BAW 208 bp overlap
ChIP hESC GSE113817.EZH2.hESC 147 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 136 bp overlap
ChIP hepatocyte ENCFF118DKH 208 bp overlap
ChIP hepatocyte ENCFF552DZB 117 bp overlap
ChIP keratinocyte ENCFF070STK 206 bp overlap
ChIP neural progenitor cell ENCFF018MKA 170 bp overlap
ChIP neural progenitor cell ENCFF018MKA 187 bp overlap
ChIP neural progenitor cell ENCFF018MKA 140 bp overlap
ChIP neural progenitor cell ENCFF472NFV 208 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 190 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 117 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 92 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 179 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 208 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 208 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 132 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 192 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 153 bp overlap
HINFP 1 dataset
Motif DE_12h DE_12h-HINFP_MA0131.3 8 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 208 bp overlap
IRF1 1 dataset
ChIP WTC11 ENCFF506LYD 208 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 195 bp overlap
JARID2 8 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 208 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 208 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 208 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 144 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 208 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 208 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 208 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 208 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 62 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 208 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 93 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 100 bp overlap
ChIP K562 ENCFF320EQC 208 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 208 bp overlap
MAX 12 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 79 bp overlap
ChIP H1 ENCFF601FOM 190 bp overlap
ChIP H1 ENCFF914VQY 151 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 109 bp overlap
ChIP Ishikawa ENCFF064TDQ 148 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 169 bp overlap
ChIP K562 ENCFF524IJO 78 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 161 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 181 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 208 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
ChIP WTC11 ENCFF223QFY 208 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 115 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 97 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 113 bp overlap
MXI1 3 datasets
ChIP H1 ENCFF963FZS 177 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 77 bp overlap
ChIP neural cell ENCFF623HQN 208 bp overlap
MYC 3 datasets
ChIP H1 ENCFF794ZJT 134 bp overlap
ChIP NB69 GSE138295.MYC.NB69 71 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 145 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 208 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 208 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 88 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 100 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 188 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCFF029AAD 166 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 102 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 102 bp overlap
NFYB 1 dataset
ChIP WTC11 ENCFF751ZTQ 208 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 208 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 208 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 208 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 148 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 198 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 166 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 208 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 208 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 208 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 208 bp overlap
ChIP H1 ENCFF239FFS 208 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 208 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 208 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 208 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 208 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 208 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 174 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 208 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 183 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 208 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 208 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 208 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 142 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 99 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 111 bp overlap
ChIP H1 ENCFF881NFR 208 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 208 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 63 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 180 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 162 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 208 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 204 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 208 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 208 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 132 bp overlap
USF1 5 datasets
ChIP H1 ENCFF090WVU 126 bp overlap
ChIP Ishikawa ENCFF728IEG 132 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 92 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
ChIP WTC11 ENCFF699QGS 200 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 208 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 99 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 208 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 208 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 54 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 79 bp overlap
ZNF138 1 dataset
ChIP WTC11 ENCFF800FUU 166 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 208 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 208 bp overlap