chr15 : 88,884,728 88,885,208
480 bp 118 TFs 5 linked genes
This 480 bp open chromatin element is linked to 5 target genes and is bound by 118 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
HAPLN3 10.6 kb Distal Multiome
MFGE8 28.5 kb Distal Multiome
ACAN 81.1 kb Distal Multiome
ABHD2 203.6 kb Distal Multiome
AEN 263.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:88,879,728 – 88,890,208
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ARNT2 2 datasets
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
Motif ES_0h ES_0h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 480 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 480 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
ATF3 2 datasets
ChIP H1 ENCFF852GZY 211 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 161 bp overlap
Arnt 2 datasets
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Motif ES_0h ES_0h-Arnt_MA0004.1 6 bp overlap
Arntl 2 datasets
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
Motif ES_0h ES_0h-Arntl_MA0603.2 8 bp overlap
BHLHE41 2 datasets
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
Motif ES_0h ES_0h-BHLHE41_MA0636.1 10 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 174 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 64 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 271 bp overlap
ChIP K562 ENCFF963TXY 302 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 179 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CREB3L4 2 datasets
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
Motif ES_0h ES_0h-CREB3L4_MA1474.2 10 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 231 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 239 bp overlap
ChIP BLaER1 ENCFF364PUR 110 bp overlap
ChIP BLaER1 ENCFF798NMV 251 bp overlap
Creb3l2 2 datasets
Motif DE_12h DE_12h-Creb3l2_MA0608.1 9 bp overlap
Motif ES_0h ES_0h-Creb3l2_MA0608.1 9 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 310 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 263 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 269 bp overlap
ChIP K562 ENCFF496AKI 277 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF4 1 dataset
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
ELK1 1 dataset
Motif DE_12h DE_12h-ELK1_MA0028.3 9 bp overlap
ELK3 1 dataset
Motif DE_12h DE_12h-ELK3_MA0759.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
ESR1 2 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 318 bp overlap
ChIP breast_tumor_Male_3 GSE104399.ESR1.breast_tumor_Male_3 419 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 126 bp overlap
ETV1 1 dataset
ChIP LNCaP GSE47120.ETV1.LNCaP 83 bp overlap
ETV4 1 dataset
Motif DE_12h DE_12h-ETV4_MA0764.4 9 bp overlap
ETV5 1 dataset
Motif DE_12h DE_12h-ETV5_MA0765.4 9 bp overlap
FEV 1 dataset
Motif DE_12h DE_12h-FEV_MA0156.4 9 bp overlap
FLI1 1 dataset
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 480 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF015GDS 480 bp overlap
HES1 2 datasets
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
Motif ES_0h ES_0h-HES1_MA1099.3 8 bp overlap
Hic1 2 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 236 bp overlap
MAX 8 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
Motif ES_0h ES_0h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF601FOM 260 bp overlap
ChIP H1 ENCFF914VQY 178 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 83 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 74 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 212 bp overlap
ChIP WTC11 ENCFF223QFY 447 bp overlap
MAX::MYC 2 datasets
Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap
Motif ES_0h ES_0h-MAXMYC_MA0059.2 10 bp overlap
MITF 8 datasets
ChIP 501-mel GSE137522.MITF.501-mel 335 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 231 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 341 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 412 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 348 bp overlap
ChIP K562 ENCFF731XJJ 245 bp overlap
MLX 2 datasets
Motif DE_12h DE_12h-MLX_MA0663.1 10 bp overlap
Motif ES_0h ES_0h-MLX_MA0663.1 10 bp overlap
MLXIPL 2 datasets
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
Motif ES_0h ES_0h-MLXIPL_MA0664.2 8 bp overlap
MNT 3 datasets
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
Motif ES_0h ES_0h-MNT_MA0825.2 6 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 124 bp overlap
MYC 2 datasets
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
Motif ES_0h ES_0h-MYC_MA0147.4 8 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 55 bp overlap
Mlxip 2 datasets
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
Motif ES_0h ES_0h-Mlxip_MA0622.2 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 376 bp overlap
NR3C1 1 dataset
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 480 bp overlap
PGR 11 datasets
ChIP T-47D GSE31129.PGR.T-47D 434 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 437 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 322 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 193 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 480 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 414 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 315 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 90 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 419 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 452 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 220 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 381 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 480 bp overlap
ChIP H1 ENCFF833NJP 143 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 5 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 118 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 238 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 207 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 228 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 230 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 202 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap
ChIP GM23338 ENCFF333SNB 253 bp overlap
ChIP H1 ENCFF698ZAP 156 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 427 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 245 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 185 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 173 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 313 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 392 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 206 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 221 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 281 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD51 6 datasets
ChIP Hep-G2 ENCSR081WLS.RAD51.Hep-G2 236 bp overlap
ChIP HepG2 ENCFF188FEZ 301 bp overlap
ChIP K-562 ENCSR524BUE.RAD51.K-562 333 bp overlap
ChIP K562 ENCFF133ELP 273 bp overlap
ChIP MCF-7 ENCFF128SEB 320 bp overlap
ChIP MCF-7 ENCSR442VBJ.RAD51.MCF-7 306 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 122 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 201 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF896IJG 262 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 186 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 143 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 199 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 126 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 202 bp overlap
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 276 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 160 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 135 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 57 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 457 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 297 bp overlap
TBP 3 datasets
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 155 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 175 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 242 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 117 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 346 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 349 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 402 bp overlap
ChIP H1 ENCFF778PAX 111 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 365 bp overlap
TFE3 3 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
Motif ES_0h ES_0h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 271 bp overlap
TFEB 2 datasets
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
TFEC 2 datasets
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
Motif ES_0h ES_0h-TFEC_MA0871.3 8 bp overlap
TOE1 2 datasets
ChIP K562 ENCFF728FRA 248 bp overlap
ChIP MCF-7 ENCFF544WQF 252 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 285 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
USF1 18 datasets
ChIP A-549 ENCSR000BPV.USF1.A-549 213 bp overlap
ChIP A-549 ENCSR000BJB.USF1.A-549 162 bp overlap
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 216 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 123 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 161 bp overlap
ChIP HepG2 ENCFF807KYJ 188 bp overlap
ChIP Ishikawa ENCFF728IEG 229 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 169 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 247 bp overlap
ChIP K562 ENCFF202SFC 353 bp overlap
ChIP K562 ENCFF633EZB 242 bp overlap
ChIP SK-N-SH ENCFF967PDP 248 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 216 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 139 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 279 bp overlap
ChIP WTC11 ENCFF699QGS 165 bp overlap
USF2 19 datasets
ChIP A-549 ENCSR563FBT.USF2.A-549 381 bp overlap
ChIP A549 ENCFF343KII 272 bp overlap
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
Motif ES_0h ES_0h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 223 bp overlap
ChIP H1 ENCFF434EDF 148 bp overlap
ChIP HeLa-S3 ENCFF765YUZ 256 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 217 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 309 bp overlap
ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 214 bp overlap
ChIP HepG2 ENCFF671JRC 246 bp overlap
ChIP IMR-90 ENCFF438KUN 233 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 195 bp overlap
ChIP K-562 ENCSR359NFW.USF2.K-562 253 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 204 bp overlap
ChIP K562 ENCFF306QPU 366 bp overlap
ChIP K562 ENCFF397QGU 229 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 251 bp overlap
ChIP WTC11 ENCFF139JAW 270 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 148 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF708 3 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
Zbtb2 1 dataset
Motif DE_12h DE_12h-Zbtb2_MA2340.1 10 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap