chr13 : 40,172,126 – 40,172,705
579 bp 109 TFs 1 linked gene
This 579 bp open chromatin element is linked to LINC00332 and is bound by 109 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00332 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:40,167,126 – 40,177,705
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 426 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 426 bp overlap
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 302 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 263 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 431 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 123 bp overlap
BACH1 1 dataset
ChIP H1 ENCFF282VDB 321 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 214 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 413 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 503 bp overlap
BRD4 8 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 382 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 247 bp overlap
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 210 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 501 bp overlap
ChIP hESC GSE33281.BRD4.hESC 157 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 456 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 455 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 370 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 424 bp overlap
CDK9 1 dataset
ChIP HEK293T_SICTR GSE51633.CDK9.HEK293T_SICTR 155 bp overlap
CREB1 2 datasets
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 50 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 110 bp overlap
CTCF 32 datasets
ChIP GM23338 ENCFF772DML 200 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 151 bp overlap
ChIP H9 ENCFF152GTF 324 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 110 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 446 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 216 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 175 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 170 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 237 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 159 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 159 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 207 bp overlap
ChIP endodermal cell ENCFF471YCZ 334 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 178 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 436 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 121 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 229 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 155 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 129 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 158 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 199 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 194 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 293 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 148 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 196 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 200 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 116 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 312 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 269 bp overlap
CTCFL 2 datasets
ChIP K-562 GSE70764.CTCFL.K-562 232 bp overlap
ChIP K-562 ENCSR000BNK.CTCFL.K-562 129 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 318 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF937OPV 205 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 203 bp overlap
ERG 4 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 241 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 458 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 203 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 278 bp overlap
ESR1 11 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 358 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 252 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 235 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 50 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 534 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 354 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 428 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 371 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 213 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 526 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 236 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 327 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 260 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 258 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 352 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 2 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 579 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 285 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 191 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 358 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 426 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 133 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 225 bp overlap
GTF2F1 1 dataset
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 153 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 241 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 171 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 378 bp overlap
HNRNPLL 3 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 297 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF355PIC 570 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 174 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 579 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 265 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 190 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 400 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 3 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 414 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 185 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 211 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 274 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 320 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 417 bp overlap
ChIP WTC11 ENCFF223QFY 471 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 446 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 372 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 187 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 235 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 241 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 420 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 71 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 153 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 177 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 564 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 488 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 334 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 444 bp overlap
POLR2A 2 datasets
ChIP prostate gland ENCFF832RQK 357 bp overlap
ChIP prostate gland ENCFF881OMH 410 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 132 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 202 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 502 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 230 bp overlap
ChIP H1 ENCFF967OJF 236 bp overlap
RARA::RXRA 1 dataset
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 428 bp overlap
REST 2 datasets
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 147 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 120 bp overlap
RFX1 2 datasets
ChIP MCF-7 ENCFF782EZS 441 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 328 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 320 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 422 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 235 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 343 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 375 bp overlap
ChIP H1 ENCFF042ZSL 484 bp overlap
SMARCA4 1 dataset
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 372 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 449 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 486 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 253 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 415 bp overlap
SUZ12 1 dataset
ChIP LNCaP GSE39459.SUZ12.LNCaP 253 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 234 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 420 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 312 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 284 bp overlap
TP53 8 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 333 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 274 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 408 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 461 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 418 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 225 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 281 bp overlap
TP63 19 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 446 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 401 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 397 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 406 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 306 bp overlap
ChIP KYSE-70 GSE46837.TP63.KYSE-70 145 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 320 bp overlap
ChIP TT GSE46837.TP63.TT 276 bp overlap
ChIP breast-organoid GSE113909.TP63.breast-organoid 170 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 307 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 272 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 374 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 528 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 392 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 332 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 337 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 496 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 327 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 210 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 358 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 379 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 240 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 309 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 220 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 258 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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