chr13 : 27,920,578 27,920,943
365 bp 101 TFs 1 linked gene
This 365 bp open chromatin element is linked to PDX1 and is bound by 101 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PDX1 579 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:27,915,578 – 27,925,943
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 64 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 94 bp overlap
ARID4A 2 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 252 bp overlap
ChIP HepG2 ENCFF142DIE 162 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 104 bp overlap
ATF3 1 dataset
ChIP WA01 ENCSR000BKC.ATF3.WA01 71 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 119 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 265 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 299 bp overlap
BRD1 3 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 365 bp overlap
ChIP RKO GSE47190.BRD1.RKO 59 bp overlap
ChIP RKO GSE47190.BRD1.RKO 244 bp overlap
BRD2 1 dataset
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 272 bp overlap
BRD4 7 datasets
ChIP 22Rv1_DHT-ABBV-075 GSE118247.BRD4.22Rv1_DHT-ABBV-075 65 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 88 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 209 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 87 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 75 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 75 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 259 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 93 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 365 bp overlap
CTCF 28 datasets
ChIP BJ ENCFF434HEC 119 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 55 bp overlap
ChIP Caco-2 ENCFF934QYS 178 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 114 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 122 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 331 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 101 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 194 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 95 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 173 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 128 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 175 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 65 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 202 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 152 bp overlap
ChIP body of pancreas ENCFF269EDN 254 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 193 bp overlap
ChIP chondrocyte ENCFF134ORZ 310 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 252 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 56 bp overlap
ChIP endodermal cell ENCFF471YCZ 239 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 149 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 132 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 149 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 365 bp overlap
ChIP neural crest cell ENCFF182LWK 237 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 304 bp overlap
ChIP transverse colon ENCFF077CMZ 266 bp overlap
CTCFL 2 datasets
ChIP FT282 GSE131931.CTCFL.FT282 365 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 229 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 365 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 62 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 365 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 208 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 365 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 73 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 97 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP MCF-7_Veh GSE117941.ESR1.MCF-7_Veh 199 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 365 bp overlap
EZH2 28 datasets
ChIP A673 ENCFF790MVL 365 bp overlap
ChIP A673 ENCFF955JRZ 365 bp overlap
ChIP GM23248 ENCFF404ZHM 211 bp overlap
ChIP GM23338 ENCFF613YON 365 bp overlap
ChIP GM23338 ENCFF886DXX 365 bp overlap
ChIP H1 ENCFF232NZA 365 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 365 bp overlap
ChIP HepG2 ENCFF912EIW 365 bp overlap
ChIP HepG2 ENCFF912EIW 279 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 231 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 62 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 282 bp overlap
ChIP SK-N-MC ENCFF434OHW 224 bp overlap
ChIP SK-N-MC ENCFF674XUJ 224 bp overlap
ChIP astrocyte ENCFF365JTP 365 bp overlap
ChIP astrocyte ENCFF365JTP 365 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 365 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 365 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 365 bp overlap
ChIP fibroblast of lung ENCFF479BAW 182 bp overlap
ChIP hepatocyte ENCFF552DZB 365 bp overlap
ChIP keratinocyte ENCFF070STK 94 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 114 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 365 bp overlap
ChIP neural cell ENCFF610EPB 295 bp overlap
ChIP neural progenitor cell ENCFF018MKA 365 bp overlap
ChIP neural progenitor cell ENCFF472NFV 365 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 343 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 82 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 135 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 93 bp overlap
GATA6 2 datasets
ChIP PATU8988 GSE47535.GATA6.PATU8988 80 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 185 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF032DND 306 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 120 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 306 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 365 bp overlap
INO80 3 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 365 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 365 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 365 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 67 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 256 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 181 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 283 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 213 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 143 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 365 bp overlap
KMT2A 3 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 140 bp overlap
ChIP HepG2 ENCFF103PKS 158 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 138 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 251 bp overlap
ChIP HepG2 ENCFF507HCX 105 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 182 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 200 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 292 bp overlap
MTA1 1 dataset
ChIP HepG2 ENCFF038CCB 178 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 365 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 182 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 283 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 116 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 60 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 313 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 279 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 61 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 58 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 365 bp overlap
PHF8 2 datasets
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 146 bp overlap
ChIP HepG2 ENCFF065NWR 246 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 337 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 133 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 50 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 365 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 135 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 365 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 254 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 253 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 238 bp overlap
RBM39 2 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 148 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 168 bp overlap
RBPJ 3 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 60 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 62 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 261 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 298 bp overlap
RNF2 4 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 273 bp overlap
ChIP H1 ENCFF239FFS 365 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 365 bp overlap
ChIP Hep-G2 ENCSR523XCR.RNF2.Hep-G2 70 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 53 bp overlap
SIN3A 1 dataset
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 191 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 53 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 172 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 61 bp overlap
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 102 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 302 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 64 bp overlap
SRSF1 1 dataset
ChIP HepG2 ENCFF509LHO 70 bp overlap
SS18 4 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 365 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 252 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 341 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 365 bp overlap
STAT3 5 datasets
ChIP FaDu_BB608 GSE78212.STAT3.FaDu_BB608 182 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 109 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 134 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 197 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 180 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 210 bp overlap
SUZ12 8 datasets
ChIP H1 ENCFF507HGF 223 bp overlap
ChIP H1 ENCFF507HGF 59 bp overlap
ChIP H1 ENCFF881NFR 365 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 169 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 64 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 334 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 66 bp overlap
ChIP NT2/D1 ENCFF574SXS 355 bp overlap
TAF15 1 dataset
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 248 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 271 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 110 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 365 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 186 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 116 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 213 bp overlap
ChIP HEK293T GSE78099.ZNF189.HEK293T 187 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 159 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 201 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 60 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 230 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 82 bp overlap
ZNF501 2 datasets
ChIP HepG2 ENCFF879XZR 347 bp overlap
ChIP HepG2 ENCFF879XZR 221 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 105 bp overlap
ZNF711 2 datasets
ChIP HEK293T GSE145160.ZNF711.HEK293T 156 bp overlap
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 307 bp overlap
ZNF777 1 dataset
ChIP HepG2 ENCFF362XDA 107 bp overlap