chr12:57,614,300–57,614,474

chr12 : 57,614,300 – 57,614,474

174 bp 101 TFs 6 linked genes

This 174 bp open chromatin element is linked to 6 target genes and is bound by 101 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000287908		805 bp	At TSS	Proximity
ARHGEF25		2.9 kb	Proximal	Proximity
SLC26A10P		5.1 kb	Proximal	Proximity
ENSG00000293429		5.1 kb	Proximal	Proximity
ENSG00000224713		5.2 kb	Proximal	Proximity
DTX3		9.7 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

101 transcription factors

ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 140 bp overlap

ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 102 bp overlap

ChIP breast_tumor_Male_7 GSE104399.AR.breast_tumor_Male_7 85 bp overlap

ARNT2 1 dataset

Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ATF1 3 datasets

ChIP K-562 ENCSR091GVJ.ATF1.K-562 174 bp overlap

ChIP K562 ENCFF817JQF 174 bp overlap

ChIP K562 ENCFF817JQF 174 bp overlap

ATF3 4 datasets

ChIP GM12878 ENCFF358BXK 174 bp overlap

ChIP GM12878 ENCSR000BJY.ATF3.GM12878 127 bp overlap

ChIP K-562 ENCSR000BNU.ATF3.K-562 130 bp overlap

ChIP K562 ENCFF965VXT 174 bp overlap

ChIP GM12878 ENCSR014YCR.ATF7.GM12878 112 bp overlap

Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap

Arntl 1 dataset

Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap

BCL11A 1 dataset

ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 71 bp overlap

BHLHE40 6 datasets

Motif DE_12h DE_12h-BHLHE40_MA0464.3 8 bp overlap

ChIP GM12878 ENCFF521IZR 174 bp overlap

ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 174 bp overlap

ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 174 bp overlap

ChIP K-562 ENCSR000EGV.BHLHE40.K-562 174 bp overlap

ChIP K562 ENCFF923NJI 174 bp overlap

BHLHE41 1 dataset

Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 98 bp overlap

ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 174 bp overlap

CEBPB 5 datasets

ChIP K-562 ENCSR000BRQ.CEBPB.K-562 102 bp overlap

ChIP K-562 ENCSR000EHE.CEBPB.K-562 104 bp overlap

ChIP K562 ENCFF189VBN 149 bp overlap

ChIP MCF-7 ENCFF772ZTQ 140 bp overlap

ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 110 bp overlap

CLOCK 1 dataset

Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap

CREB1 9 datasets

ChIP A-549 ENCSR000BRB.CREB1.A-549 146 bp overlap

ChIP GM12878 ENCFF870CVH 174 bp overlap

ChIP GM12878 ENCFF870CVH 62 bp overlap

ChIP GM12878 ENCSR000BUF.CREB1.GM12878 128 bp overlap

ChIP GM23338 ENCFF432ZEW 174 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 151 bp overlap

ChIP K562 ENCFF786DGQ 174 bp overlap

ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 174 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 134 bp overlap

CREM 3 datasets

ChIP GM12878 ENCSR839XZU.CREM.GM12878 135 bp overlap

ChIP K-562 ENCSR077DKV.CREM.K-562 166 bp overlap

ChIP K562 ENCFF180STA 174 bp overlap

ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 167 bp overlap

CXXC5 1 dataset

ChIP K562 ENCFF497CZN 174 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF031ISE 162 bp overlap

ChIP BLaER1 ENCFF093OYK 174 bp overlap

ChIP BLaER1 ENCFF274GAT 174 bp overlap

DDX20 2 datasets

ChIP K-562 ENCSR446LAV.DDX20.K-562 174 bp overlap

ChIP K562 ENCFF205RDN 174 bp overlap

DPF1 2 datasets

ChIP K-562 GSE97661.DPF1.K-562 174 bp overlap

ChIP MCF-7 GSE97661.DPF1.MCF-7 174 bp overlap

DPF2 3 datasets

ChIP GM12878 ENCFF681AJV 174 bp overlap

ChIP GM12878 ENCSR509FWH.DPF2.GM12878 174 bp overlap

ChIP K-562 ENCSR219BXP.DPF2.K-562 152 bp overlap

E2F1 2 datasets

ChIP K-562 ENCSR720HUL.E2F1.K-562 174 bp overlap

ChIP K562 ENCFF191BFW 174 bp overlap

E4F1 2 datasets

ChIP K-562 ENCSR731LHZ.E4F1.K-562 174 bp overlap

ChIP K562 ENCFF622HMZ 174 bp overlap

ChIP NALM-6 GSE126300.EBF1.NALM-6 174 bp overlap

ChIP K562 ENCFF940SAL 174 bp overlap

ChIP K562 ENCFF511ZZZ 161 bp overlap

ESR1 6 datasets

ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 130 bp overlap

ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 110 bp overlap

ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 134 bp overlap

ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 64 bp overlap

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 174 bp overlap

ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 174 bp overlap

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 166 bp overlap

ChIP K-562 ENCSR000FAI.FOS.K-562 174 bp overlap

ChIP K562 ENCFF951GBI 174 bp overlap

GFI1B 1 dataset

ChIP K-562 ENCSR509GDT.GFI1B.K-562 174 bp overlap

ChIP K-562 ENCSR197ALX.HDGF.K-562 174 bp overlap

HOXB5 1 dataset

ChIP A-549 ENCSR748HJZ.HOXB5.A-549 174 bp overlap

IKZF1 3 datasets

ChIP GM12878 ENCFF753XDO 77 bp overlap

ChIP GM12878 ENCFF824TGK 85 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 62 bp overlap

IKZF2 1 dataset

ChIP GM12878 ENCFF238LYK 174 bp overlap

INTS13 1 dataset

ChIP monocyte GSE106359.INTS13.monocyte 166 bp overlap

ChIP K-562 ENCSR000EGT.IRF1.K-562 170 bp overlap

ChIP U266 GSE142493.IRF4.U266 174 bp overlap

L3MBTL2 1 dataset

ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 174 bp overlap

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap

ChIP K-562 ENCSR000EFV.MAX.K-562 165 bp overlap

ChIP K562 ENCFF110LJS 174 bp overlap

ChIP P493-6 GSE36354.MAX.P493-6 174 bp overlap

ChIP K562 ENCFF333ZIV 174 bp overlap

MED12 1 dataset

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 57 bp overlap

MEIS2 2 datasets

ChIP K-562 ENCSR851BNE.MEIS2.K-562 174 bp overlap

ChIP K562 ENCFF320GSD 153 bp overlap

MLXIPL 1 dataset

Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap

Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap

ChIP K-562 ENCSR390VGH.MNT.K-562 174 bp overlap

ChIP K-562 ENCSR512NLO.MNT.K-562 174 bp overlap

ChIP K562 ENCFF450LDL 174 bp overlap

ChIP K562 ENCFF820IGH 174 bp overlap

ChIP RH4 GSE155861.MTA2.RH4 127 bp overlap

ChIP THP-1 GSE90769.MYB.THP-1 162 bp overlap

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

Mlxip 1 dataset

Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap

NELFA 1 dataset

ChIP K-562_HS GSE112379.NELFA.K-562_HS 98 bp overlap

NELFE 1 dataset

ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 174 bp overlap

NFKB1 1 dataset

ChIP L1236 GSE63736.NFKB1.L1236 89 bp overlap

NFYA 8 datasets

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

ChIP HeLa-S3 ENCFF016YWF 174 bp overlap

ChIP HeLa-S3 ENCFF016YWF 142 bp overlap

ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 174 bp overlap

ChIP K-562 GSE26439.NFYA.K-562 174 bp overlap

ChIP K-562 ENCSR000EGR.NFYA.K-562 174 bp overlap

ChIP K562 ENCFF666BET 174 bp overlap

ChIP K562 ENCFF732HOX 174 bp overlap

NFYB 10 datasets

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

ChIP GM12878 ENCFF474DNH 174 bp overlap

ChIP GM12878 ENCSR000DNM.NFYB.GM12878 174 bp overlap

ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 125 bp overlap

ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 174 bp overlap

ChIP HepG2 ENCFF174VYX 174 bp overlap

ChIP K-562 GSE26439.NFYB.K-562 174 bp overlap

ChIP K-562 ENCSR000EGQ.NFYB.K-562 174 bp overlap

ChIP K562 ENCFF709RXX 116 bp overlap

ChIP WTC11 ENCFF751ZTQ 174 bp overlap

NFYC 3 datasets

Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap

ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 174 bp overlap

ChIP HepG2 ENCFF836FYP 174 bp overlap

NR2F1 1 dataset

ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 165 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 174 bp overlap

ChIP NALM-6 GSE126300.PAX5.NALM-6 59 bp overlap

PBX1 3 datasets

ChIP A-549 ENCSR637RKG.PBX1.A-549 174 bp overlap

ChIP A549 ENCFF475JCE 136 bp overlap

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 174 bp overlap

PBX2 4 datasets

ChIP K-562 ENCSR263DFP.PBX2.K-562 174 bp overlap

ChIP K-562 ENCSR633EIC.PBX2.K-562 110 bp overlap

ChIP K562 ENCFF286KMN 174 bp overlap

ChIP K562 ENCFF385PDC 174 bp overlap

PBX3 3 datasets

ChIP GM12878 ENCFF285BQQ 161 bp overlap

ChIP GM12878 ENCSR000BGR.PBX3.GM12878 174 bp overlap

ChIP SK-N-SH ENCFF876BMC 150 bp overlap

PKNOX1 8 datasets

ChIP GM12878 ENCFF589FCY 174 bp overlap

ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 174 bp overlap

ChIP HEK293T ENCFF174WDB 174 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 174 bp overlap

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 174 bp overlap

ChIP K562 ENCFF236IUS 174 bp overlap

ChIP MCF-7 ENCFF116OCS 174 bp overlap

ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 174 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 174 bp overlap

POLR2A 2 datasets

ChIP K562 ENCFF836GHX 174 bp overlap

ChIP K562 ENCFF836GHX 174 bp overlap

POU2F1 2 datasets

ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 135 bp overlap

ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 174 bp overlap

POU2F2 1 dataset

ChIP GM12878 ENCFF207RKY 126 bp overlap

PRDM10 2 datasets

ChIP K-562 ENCSR120MPG.PRDM10.K-562 165 bp overlap

ChIP K562 ENCFF740YLK 102 bp overlap

RAD21 1 dataset

ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap

RAD51 6 datasets

ChIP GM12878 ENCFF916JXQ 174 bp overlap

ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 174 bp overlap

ChIP K-562 ENCSR524BUE.RAD51.K-562 174 bp overlap

ChIP K562 ENCFF133ELP 174 bp overlap

ChIP MCF-7 ENCFF128SEB 174 bp overlap

ChIP MCF-7 ENCSR442VBJ.RAD51.MCF-7 174 bp overlap

ChIP GM12878 ENCSR785OKZ.RB1.GM12878 174 bp overlap

RBBP4 1 dataset

ChIP RH5 GSE155861.RBBP4.RH5 73 bp overlap

RBM25 1 dataset

ChIP K-562 ENCSR791OZM.RBM25.K-562 174 bp overlap

ChIP NHEK GSE29498.RBPJ.NHEK 75 bp overlap

ChIP GM12878 ENCSR387QUV.RELB.GM12878 141 bp overlap

ChIP K562 ENCFF688UKW 174 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 112 bp overlap

RUNX1 1 dataset

ChIP NALM-6 GSE126300.RUNX1.NALM-6 174 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 130 bp overlap

RUNX3 1 dataset

ChIP GM12878 ENCFF395WHA 72 bp overlap

ChIP A-549 ENCSR000BPE.SP1.A-549 154 bp overlap

ChIP GM12878 ENCFF620LDJ 174 bp overlap

ChIP GM12878 ENCSR000BHK.SP1.GM12878 174 bp overlap

ChIP H1 ENCFF263FUH 174 bp overlap

ChIP K-562 ENCSR991ELG.SP1.K-562 174 bp overlap

ChIP K562 ENCFF907BMO 174 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 164 bp overlap

ChIP H1 ENCFF903ACN 174 bp overlap

ChIP HEK293 ENCFF181QXT 174 bp overlap

ChIP HEK293 ENCSR807LQP.SP2.HEK293 174 bp overlap

ChIP HEK293T ERP007114.SP2.HEK293T 174 bp overlap

ChIP K-562 ENCSR000BNL.SP2.K-562 173 bp overlap

ChIP K562 ENCFF891GNQ 174 bp overlap

ChIP WA01 ENCSR000BQG.SP2.WA01 151 bp overlap

ChIP HEK293 GSE76494.SP4.HEK293 174 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 128 bp overlap

SREBP2 1 dataset

ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 174 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 174 bp overlap

ChIP K562 ENCFF901UYM 174 bp overlap

TCF12 1 dataset

ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 111 bp overlap

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 174 bp overlap

TFAP2A 1 dataset

ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 135 bp overlap

TFAP2C 4 datasets

ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 158 bp overlap

ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 108 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 174 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 115 bp overlap

USF1 20 datasets

ChIP A-549 ENCSR000BPV.USF1.A-549 174 bp overlap

ChIP A-549 ENCSR000BJB.USF1.A-549 174 bp overlap

ChIP A-549 ENCSR000BHX.USF1.A-549 174 bp overlap

ChIP GM12878 ENCFF880HJL 174 bp overlap

ChIP GM12878 ENCSR000BGI.USF1.GM12878 162 bp overlap

ChIP H1 ENCFF090WVU 174 bp overlap

ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 164 bp overlap

ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 159 bp overlap

ChIP HepG2 ENCFF201JKA 136 bp overlap

ChIP HepG2 ENCFF807KYJ 174 bp overlap

ChIP Ishikawa ENCFF728IEG 154 bp overlap

ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 170 bp overlap

ChIP K-562 ENCSR000BKT.USF1.K-562 174 bp overlap

ChIP K562 ENCFF202SFC 174 bp overlap

ChIP K562 ENCFF633EZB 174 bp overlap

ChIP SK-N-SH ENCFF967PDP 174 bp overlap

ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 174 bp overlap

ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 119 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 174 bp overlap

ChIP WTC11 ENCFF699QGS 174 bp overlap

USF2 20 datasets

ChIP A-549 ENCSR563FBT.USF2.A-549 174 bp overlap

ChIP A549 ENCFF343KII 174 bp overlap

ChIP GM12878 ENCFF078SJX 174 bp overlap

ChIP GM12878 GSE97661.USF2.GM12878 174 bp overlap

ChIP GM12878 ENCSR000DZU.USF2.GM12878 174 bp overlap

ChIP H1 ENCFF434EDF 94 bp overlap

ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 154 bp overlap

ChIP Hep-G2 GSE97661.USF2.Hep-G2 174 bp overlap

ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 171 bp overlap

ChIP IMR-90 ENCFF438KUN 174 bp overlap

ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 174 bp overlap

ChIP K-562 GSE111469.USF2.K-562 174 bp overlap

ChIP K-562 ENCSR359NFW.USF2.K-562 174 bp overlap

ChIP K-562 ENCSR578KEN.USF2.K-562 174 bp overlap

ChIP K-562 ENCSR000EHG.USF2.K-562 162 bp overlap

ChIP K562 ENCFF306QPU 174 bp overlap

ChIP K562 ENCFF397QGU 146 bp overlap

ChIP K562 ENCFF495XTL 174 bp overlap

ChIP WA01 ENCSR000ECD.USF2.WA01 174 bp overlap

ChIP WTC11 ENCFF139JAW 139 bp overlap

XRCC5 1 dataset

ChIP K-562 GSE120104.XRCC5.K-562 102 bp overlap

ZBTB40 1 dataset

ChIP K-562 ENCSR237VLT.ZBTB40.K-562 56 bp overlap

ZNF143 1 dataset

ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 174 bp overlap

ZNF148 1 dataset

ChIP K-562 GSE121133.ZNF148.K-562 50 bp overlap

ZNF316 1 dataset

ChIP K562 ENCFF838QCD 174 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF687 1 dataset

ChIP GM12878 ENCFF233SGE 151 bp overlap