chr1 : 207,030,615 207,030,842
227 bp 104 TFs 1 linked gene
This 227 bp open chromatin element is linked to C1orf116 and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
C1orf116 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:207,025,615 – 207,035,842
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 2 datasets
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 149 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 159 bp overlap
ARID5B 2 datasets
ChIP HepG2 ENCFF964FWK 227 bp overlap
ChIP HepG2 ENCFF964FWK 50 bp overlap
ATF2 3 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 89 bp overlap
ChIP HepG2 ENCFF955VER 146 bp overlap
ChIP K562 ENCFF139ZZG 124 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 225 bp overlap
BRD4 12 datasets
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 106 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 79 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 155 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 218 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 116 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 140 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 109 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 227 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 148 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 227 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 218 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 196 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 216 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 98 bp overlap
CEBPA 2 datasets
ChIP HepG2 ENCFF175DFS 80 bp overlap
ChIP HepG2 ENCFF175DFS 227 bp overlap
CEBPB 5 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 227 bp overlap
ChIP A549 ENCFF781RLJ 112 bp overlap
ChIP A549 ENCFF781RLJ 210 bp overlap
ChIP HeLa-S3 ENCFF722WEG 58 bp overlap
ChIP K562 ENCFF584CTB 204 bp overlap
CEBPG 5 datasets
ChIP HepG2 ENCFF503XBC 82 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 90 bp overlap
ChIP K562 ENCFF783ADE 84 bp overlap
ChIP K562 ENCFF783ADE 227 bp overlap
ChIP K562 ENCFF956TPS 200 bp overlap
CHD1 1 dataset
ChIP LNCaP_DHT GSE64528.CHD1.LNCaP_DHT 161 bp overlap
CREM 1 dataset
ChIP Hep-G2 ENCSR903ELW.CREM.Hep-G2 199 bp overlap
CTBP2 1 dataset
ChIP LNCaP_DHT24H GSE58428.CTBP2.LNCaP_DHT24H 116 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 133 bp overlap
ChIP BLaER1 ENCFF274GAT 221 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 153 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 227 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 227 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
EP300 3 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 197 bp overlap
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF354ACD 227 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 137 bp overlap
ESR1 5 datasets
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 196 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 54 bp overlap
ChIP breast_tumor_Male_16 GSE104399.ESR1.breast_tumor_Male_16 195 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 119 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 55 bp overlap
ESRRA 1 dataset
ChIP HepG2 ENCFF033DVS 227 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 227 bp overlap
FOXA1 4 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 159 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 227 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 113 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 138 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 210 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 227 bp overlap
ChIP DE DE-FOXA2-1 227 bp overlap
ChIP DE DE-FOXA2-2 227 bp overlap
ChIP HepG2 ENCFF894AYY 227 bp overlap
FOXJ3 1 dataset
ChIP HepG2 ENCFF430OSX 227 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 197 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 227 bp overlap
GABPA 2 datasets
ChIP K562 ENCFF139LXS 160 bp overlap
ChIP K562 ENCFF139LXS 227 bp overlap
GATA3 2 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 195 bp overlap
ChIP A549 ENCFF226FVV 227 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 227 bp overlap
ChIP DE DE-GATA4-2 227 bp overlap
ChIP foregut GSE117136.GATA4.foregut 227 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 227 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 189 bp overlap
ChIP DE DE-GATA6-1 227 bp overlap
ChIP DE DE-GATA6-2 227 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 227 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 227 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 227 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 227 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 227 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 132 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 227 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 188 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 227 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 227 bp overlap
ChIP foregut GSE117136.GATA6.foregut 227 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 227 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 227 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 227 bp overlap
HDAC2 3 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 199 bp overlap
ChIP HepG2 ENCFF087XCR 227 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 93 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 57 bp overlap
HMGXB3 2 datasets
ChIP HepG2 ENCFF161CYU 227 bp overlap
ChIP HepG2 ENCFF161CYU 215 bp overlap
HNF1A 6 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 118 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 56 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 167 bp overlap
ChIP HepG2 ENCFF352VYI 227 bp overlap
ChIP HepG2 ENCFF540TRC 227 bp overlap
ChIP NY15 GSE108150.HNF1A.NY15 195 bp overlap
HNF1B 2 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 175 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 117 bp overlap
HNF4A 7 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 227 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 222 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 212 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 110 bp overlap
ChIP HepG2 ENCFF146SSF 227 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 227 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 227 bp overlap
HNF4G 1 dataset
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 194 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 131 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 218 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 227 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 91 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 116 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 116 bp overlap
ISL2 2 datasets
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF742RIP 227 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 227 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 212 bp overlap
KAT8 1 dataset
ChIP HepG2 ENCFF890JFC 227 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 222 bp overlap
ChIP K562 ENCFF128TYE 227 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 227 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 227 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 227 bp overlap
MAX 2 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 227 bp overlap
ChIP A549 ENCFF310XGQ 227 bp overlap
MED1 4 datasets
ChIP A-549 GSE76893.MED1.A-549 203 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 114 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 227 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 195 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 125 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 114 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 53 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 227 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 123 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 117 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 76 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 156 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 198 bp overlap
NR2C1 4 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 227 bp overlap
ChIP K-562 ENCSR742IDN.NR2C1.K-562 216 bp overlap
ChIP K562 ENCFF239KMA 227 bp overlap
ChIP K562 ENCFF568JLK 227 bp overlap
NR2C2 4 datasets
ChIP Hep-G2 ENCSR559ZKI.NR2C2.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF944PRH 227 bp overlap
ChIP K-562 ENCSR750LYM.NR2C2.K-562 227 bp overlap
ChIP K562 ENCFF750AXF 227 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 227 bp overlap
ChIP K562 ENCFF221HJH 227 bp overlap
NR2F2 3 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 186 bp overlap
ChIP K-562 ENCSR000BRS.NR2F2.K-562 227 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 174 bp overlap
NR2F6 6 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF429VKC 170 bp overlap
ChIP HepG2 ENCFF429VKC 131 bp overlap
ChIP HepG2 ENCFF514UJI 227 bp overlap
ChIP K-562 ENCSR707QWA.NR2F6.K-562 227 bp overlap
ChIP K562 ENCFF674RQA 227 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 227 bp overlap
NR5A2 2 datasets
ChIP A-549 ENCSR190GIW.NR5A2.A-549 227 bp overlap
ChIP A549 ENCFF834RVE 227 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 127 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 80 bp overlap
POLR2A 5 datasets
ChIP Peyer's patch ENCFF767HVN 131 bp overlap
ChIP body of pancreas ENCFF727UBE 158 bp overlap
ChIP stomach ENCFF565IOD 103 bp overlap
ChIP stomach ENCFF820WZN 172 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 108 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 223 bp overlap
PPARG 4 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 227 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 227 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF329FBJ 227 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 218 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 227 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF554DMZ 192 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 133 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 113 bp overlap
RXRA 1 dataset
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 156 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 227 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 78 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 221 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 137 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 208 bp overlap
ChIP HepG2 ENCFF615GTE 227 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 146 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 190 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 180 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 227 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 185 bp overlap
SP1 2 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 197 bp overlap
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 177 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 227 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 227 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 174 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 143 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 95 bp overlap
ZEB1 2 datasets
ChIP HepG2 ENCFF808RQT 227 bp overlap
ChIP PDAC GSE64557.ZEB1.PDAC 227 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 227 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 160 bp overlap
ZMYM4 2 datasets
ChIP HepG2 ENCFF567SQY 227 bp overlap
ChIP HepG2 ENCFF567SQY 197 bp overlap
ZNF331 2 datasets
ChIP HepG2 ENCFF842SZN 131 bp overlap
ChIP HepG2 ENCFF842SZN 227 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF331VPZ 123 bp overlap
ZNF740 2 datasets
ChIP K562 ENCFF447IXE 227 bp overlap
ChIP K562 ENCFF447IXE 227 bp overlap
ZSCAN5A 2 datasets
ChIP HepG2 ENCFF633DFI 86 bp overlap
ChIP HepG2 ENCFF633DFI 227 bp overlap