chr12 : 10,215,193 10,215,806
613 bp 115 TFs 1 linked gene
This 613 bp open chromatin element is linked to GABARAPL1 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GABARAPL1 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:10,210,193 – 10,220,806
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa GSE40632.AFF4.HeLa 111 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 108 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 414 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 218 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 201 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 546 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 231 bp overlap
BRCA1 1 dataset
ChIP HeLa-S3 ENCFF218GPC 74 bp overlap
BRD4 3 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 225 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 98 bp overlap
ChIP MV4-11_IBET151_5000nM GSE120715.BRD4.MV4-11_IBET151_5000nM 117 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 136 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 286 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 252 bp overlap
ChIP K562 ENCFF739JDE 329 bp overlap
ChIP K562 ENCFF775HUO 235 bp overlap
E2F6 2 datasets
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 179 bp overlap
EBF3 1 dataset
Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 284 bp overlap
EP300 3 datasets
ChIP HeLa-S3 ENCFF089VPQ 58 bp overlap
ChIP gastroesophageal sphincter ENCFF211FPL 61 bp overlap
ChIP tibial nerve ENCFF346AYA 87 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 156 bp overlap
ESRRA 1 dataset
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 145 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 318 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 335 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
Ebf2 1 dataset
Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap
Erg 1 dataset
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 293 bp overlap
FOXA2 4 datasets
ChIP liver ENCFF888VJF 136 bp overlap
ChIP liver ENCFF888VJF 339 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 57 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 85 bp overlap
GABPA 1 dataset
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 279 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 151 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 152 bp overlap
GATA2 3 datasets
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 154 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 260 bp overlap
GATA3 4 datasets
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 185 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 311 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 192 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 183 bp overlap
GATA4 9 datasets
ChIP A-549 GSE85002.GATA4.A-549 162 bp overlap
ChIP DE DE-GATA4-1 383 bp overlap
ChIP DE DE-GATA4-2 421 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 459 bp overlap
ChIP foregut GSE117136.GATA4.foregut 390 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 613 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 324 bp overlap
GATA6 18 datasets
ChIP AGS GSE51705.GATA6.AGS 227 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 109 bp overlap
ChIP DE DE-GATA6-1 355 bp overlap
ChIP DE DE-GATA6-2 430 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 408 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 468 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 351 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 418 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 560 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 410 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 227 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 165 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 457 bp overlap
ChIP foregut GSE117136.GATA6.foregut 322 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 279 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 327 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 289 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 291 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 221 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 283 bp overlap
ChIP K562 ENCFF744ALD 359 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 104 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 366 bp overlap
HMBOX1 2 datasets
ChIP HeLa GSE46237.HMBOX1.HeLa 172 bp overlap
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 239 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 143 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 85 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 206 bp overlap
Irf1 2 datasets
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 486 bp overlap
JUND 2 datasets
ChIP liver ENCFF007WWT 90 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 71 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 222 bp overlap
KLF5 3 datasets
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 184 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 176 bp overlap
MAZ 5 datasets
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 ENCFF994GSG 467 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 264 bp overlap
ChIP K-562 ENCSR163IUV.MAZ.K-562 200 bp overlap
MGA::EVX1 2 datasets
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 369 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 172 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 464 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 222 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 312 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 200 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 241 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 174 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 183 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 228 bp overlap
NELFA 1 dataset
ChIP HeLa_1h-Flavo-0-H2O2 GSE93931.NELFA.HeLa_1h-Flavo-0-H2O2 482 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 53 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 542 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 86 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 124 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 165 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 440 bp overlap
POLR2A 12 datasets
ChIP HeLa-S3 ENCFF224LWS 119 bp overlap
ChIP HeLa-S3 ENCFF773DNG 227 bp overlap
ChIP body of pancreas ENCFF501FEC 115 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 314 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 56 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 505 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 338 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 271 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 511 bp overlap
ChIP heart left ventricle ENCFF591JWH 147 bp overlap
ChIP heart left ventricle ENCFF591JWH 347 bp overlap
ChIP stomach ENCFF820WZN 138 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 389 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 2 datasets
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_72h DE_72h-PpargRxra_MA0065.3 13 bp overlap
Prdm15 1 dataset
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RELA 4 datasets
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 68 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 165 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 235 bp overlap
REST 2 datasets
ChIP liver ENCFF240FWT 102 bp overlap
ChIP liver ENCSR867WPH.REST.liver 57 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 359 bp overlap
RUNX2 2 datasets
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 262 bp overlap
ChIP PER-117 GSE151819.RUNX2.PER-117 290 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 138 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 306 bp overlap
SMARCA4 8 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 353 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 331 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 334 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 382 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 455 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 374 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 613 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 238 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
SMC3 2 datasets
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 248 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 140 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 76 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 379 bp overlap
ChIP K562 ENCFF059YCJ 324 bp overlap
SP1 2 datasets
ChIP liver ENCFF769YSM 106 bp overlap
ChIP liver ENCFF769YSM 309 bp overlap
SP4 2 datasets
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPI1 5 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 221 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 473 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 535 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 220 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 219 bp overlap
SPIB 3 datasets
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
STAT1 3 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 520 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 526 bp overlap
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 613 bp overlap
STAT1::STAT2 2 datasets
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 2 datasets
ChIP HeLa-S3 ENCFF655DGU 92 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 241 bp overlap
STAT5B 3 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 421 bp overlap
ChIP CD8_H9RET GSE64713.STAT5B.CD8_H9RET 268 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 613 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 128 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 177 bp overlap
Spi1 1 dataset
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 256 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 116 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 223 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 157 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 147 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 315 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 238 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 127 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 165 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 161 bp overlap
ZBTB2 2 datasets
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 258 bp overlap
ChIP K562 ENCFF290ESQ 353 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 288 bp overlap
ZEB2 4 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 322 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 251 bp overlap
ChIP K562 ENCFF795CMH 233 bp overlap
ChIP K562 ENCFF975RXS 135 bp overlap
ZFP14 2 datasets
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 2 datasets
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 2 datasets
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF24 3 datasets
ChIP K-562 ENCSR117WTM.ZNF24.K-562 161 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 130 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 219 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 321 bp overlap
ZNF324 2 datasets
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 104 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 174 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 64 bp overlap
ZNF701 1 dataset
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap