chr11 : 123,434,908 – 123,435,335
427 bp 104 TFs 1 linked gene
This 427 bp open chromatin element is linked to GRAMD1B and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GRAMD1B 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:123,429,908 – 123,440,335
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 2 datasets
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 235 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 205 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 331 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 424 bp overlap
ATF3 2 datasets
Motif DE_12h DE_12h-ATF3_MA0605.3 10 bp overlap
Motif DE_24h DE_24h-ATF3_MA0605.3 10 bp overlap
ATF7 2 datasets
Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap
Motif DE_24h DE_24h-ATF7_MA0834.2 10 bp overlap
Atf1 2 datasets
Motif DE_12h DE_12h-Atf1_MA0604.1 8 bp overlap
Motif DE_24h DE_24h-Atf1_MA0604.1 8 bp overlap
BACH2 2 datasets
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
Motif DE_24h DE_24h-BACH2_MA1470.2 19 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 213 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 292 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 294 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 276 bp overlap
CEBPA 6 datasets
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 224 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 253 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 308 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 282 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 284 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 268 bp overlap
CEBPB 4 datasets
ChIP monocyte GSE98367.CEBPB.monocyte 150 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 222 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 277 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 177 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 208 bp overlap
CREB3 2 datasets
Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap
Motif DE_24h DE_24h-CREB3_MA0638.2 12 bp overlap
CREBBP 2 datasets
ChIP monocyte_IFNg GSE131294.CREBBP.monocyte_IFNg 164 bp overlap
ChIP monocyte_IFNg-LPS GSE131294.CREBBP.monocyte_IFNg-LPS 176 bp overlap
CREM 2 datasets
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
Motif DE_24h DE_24h-CREM_MA0609.3 10 bp overlap
CTCF 4 datasets
ChIP 22Rv1 ENCFF466OXN 160 bp overlap
ChIP C4-2B ENCFF821XVN 199 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 184 bp overlap
ChIP RWPE2 ENCFF911IEE 149 bp overlap
Creb5 2 datasets
Motif DE_12h DE_12h-Creb5_MA0840.2 10 bp overlap
Motif DE_24h DE_24h-Creb5_MA0840.2 10 bp overlap
Crx 4 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 169 bp overlap
DPRX 2 datasets
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
Motif DE_24h DE_24h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 340 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 190 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 399 bp overlap
FOS 2 datasets
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
FOS::JUN 2 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 2 datasets
Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_24h DE_24h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 2 datasets
Motif DE_12h DE_12h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_24h DE_24h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUND 2 datasets
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA1 3 datasets
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 145 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 186 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 351 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 427 bp overlap
ChIP DE DE-FOXA2-2 427 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 427 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 248 bp overlap
ChIP DE DE-GATA6-2 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 354 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 304 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 359 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 294 bp overlap
GSC 4 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
GSC2 4 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 338 bp overlap
IRF1 1 dataset
ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 169 bp overlap
JDP2 2 datasets
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
Motif DE_24h DE_24h-JDP2_MA0656.2 10 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 242 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 265 bp overlap
JUN::JUNB 2 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_24h DE_24h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 2 datasets
Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap
Motif DE_24h DE_24h-JUNB_MA1140.3 11 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE83671.KMT2A.THP-1 183 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 427 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 259 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 427 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 427 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 287 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 90 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 427 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 427 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 164 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 233 bp overlap
OTX1 4 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 127 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 308 bp overlap
PITX1 4 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap
PITX3 4 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 241 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 305 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 427 bp overlap
PROX1 2 datasets
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
Motif DE_24h DE_24h-PROX1_MA0794.1 12 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 198 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 149 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 185 bp overlap
RELB 2 datasets
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
Motif DE_24h DE_24h-RELB_MA1117.2 7 bp overlap
RHOXF1 4 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 202 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 205 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 427 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 221 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 299 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 300 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 199 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 265 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 297 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 171 bp overlap
SMARCA4 6 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 246 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 233 bp overlap
ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 349 bp overlap
ChIP G-401_NoDox GSE71504.SMARCA4.G-401_NoDox 241 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 255 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 218 bp overlap
SMARCC1 3 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 302 bp overlap
ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 285 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 180 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 315 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 164 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPI1 11 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 233 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 182 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 186 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 173 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 107 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 160 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 206 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 132 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 134 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 104 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 175 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 224 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 173 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 232 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 218 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 348 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif DE_24h DE_24h-TEAD2_MA1121.2 7 bp overlap
TEAD4 5 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_24h DE_24h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 327 bp overlap
ChIP H1 ENCFF778PAX 193 bp overlap
ChIP WTC11 ENCFF114TZS 335 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 230 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 395 bp overlap
XBP1 2 datasets
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
Motif DE_24h DE_24h-XBP1_MA0844.2 11 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 219 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 386 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_24h DE_24h-ZNF708_MA1730.2 9 bp overlap
ZNF740 2 datasets
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap
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