chr1 : 21,436,521 21,437,523
1,002 bp 100 TFs 6 linked genes
This 1.0 kb open chromatin element is linked to 6 target genes and is bound by 100 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
NBPF3 2.6 kb Proximal Proximity
NBPF2P 8.6 kb Proximal Proximity
ALPL 72.4 kb Distal Multiome
ECE1 91.5 kb Distal Multiome
RAP1GAP 232.3 kb Distal Multiome
EIF4G3 260.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:21,431,521 – 21,442,523
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 175 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 164 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 161 bp overlap
ARID4A 2 datasets
ChIP HepG2 ENCFF142DIE 625 bp overlap
ChIP HepG2 ENCFF142DIE 745 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 289 bp overlap
BCOR 5 datasets
ChIP K562 ENCFF343XWA 171 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 182 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 280 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 140 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 393 bp overlap
BRD2 6 datasets
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 165 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 114 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 158 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 185 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 165 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 248 bp overlap
BRD4 6 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 131 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 219 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 150 bp overlap
ChIP hESC GSE33281.BRD4.hESC 162 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 269 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 277 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 292 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 151 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 111 bp overlap
ChIP BLaER1 ENCFF460KDD 68 bp overlap
E2F1 1 dataset
ChIP HeLa GSE22478.E2F1.HeLa 128 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 271 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 100 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 147 bp overlap
EGR1 2 datasets
ChIP A-375 GSE116190.EGR1.A-375 171 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 191 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 296 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 267 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 437 bp overlap
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 2 datasets
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 223 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 675 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 482 bp overlap
GLIS3 2 datasets
ChIP H9_plus GSE109562.GLIS3.H9_plus 320 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 274 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 181 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 174 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 136 bp overlap
HNRNPLL 3 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 196 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 196 bp overlap
ChIP HepG2 ENCFF355PIC 348 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 202 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 262 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 701 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 291 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 151 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 214 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 256 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MAX 6 datasets
ChIP H1 ENCFF914VQY 87 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 145 bp overlap
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 139 bp overlap
ChIP HepG2 ENCFF507HCX 350 bp overlap
ChIP WTC11 ENCFF223QFY 297 bp overlap
MNX1 2 datasets
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 211 bp overlap
ChIP HepG2 ENCFF938KYA 445 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 191 bp overlap
MYCN 1 dataset
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 141 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 143 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 336 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 131 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 289 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 289 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 292 bp overlap
PCBP1 1 dataset
ChIP K-562 GSE120104.PCBP1.K-562 178 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 325 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 198 bp overlap
POU2F1 1 dataset
ChIP HepG2 ENCFF422JZU 265 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 279 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 474 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 133 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 608 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 285 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
RAD21 2 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 124 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 279 bp overlap
RBM25 1 dataset
ChIP K562 ENCFF248CGR 170 bp overlap
RBM39 3 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 246 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 243 bp overlap
ChIP HepG2 ENCFF084YZE 433 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 84 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 205 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 285 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 260 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 214 bp overlap
RXR 2 datasets
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 229 bp overlap
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 119 bp overlap
RXRA 1 dataset
ChIP HepG2 ENCFF763IEA 100 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 202 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 149 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 516 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 210 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 142 bp overlap
SP4 2 datasets
ChIP HepG2 ENCFF865DSQ 561 bp overlap
ChIP HepG2 ENCFF865DSQ 561 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 493 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 397 bp overlap
SRSF3 1 dataset
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 249 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 141 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 284 bp overlap
SUZ12 1 dataset
ChIP hiPSC GSE124903.SUZ12.hiPSC 186 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 245 bp overlap
TFAP2C 4 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 288 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 301 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 291 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 322 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 262 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 256 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 272 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 236 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 347 bp overlap
ZBTB33 4 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 288 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 124 bp overlap
ChIP K562 ENCFF427SDV 337 bp overlap
ChIP K562 ENCFF875HLX 212 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 188 bp overlap
ZBTB43 2 datasets
ChIP WTC11 ENCFF058JUB 185 bp overlap
ChIP WTC11 ENCFF058JUB 436 bp overlap
ZBTB7A 2 datasets
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 197 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 152 bp overlap
ZFP36 7 datasets
ChIP GM12878 ENCFF234WRG 105 bp overlap
ChIP HeLa-S3 ENCSR184MFH.ZFP36.HeLa-S3 79 bp overlap
ChIP Hep-G2 ENCSR382XLA.ZFP36.Hep-G2 87 bp overlap
ChIP HepG2 ENCFF486SQU 101 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 133 bp overlap
ChIP K562 ENCFF255RZG 93 bp overlap
ChIP K562 ENCFF255RZG 297 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 239 bp overlap
ChIP HepG2 ENCFF016NZF 429 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 128 bp overlap
ZMYM3 1 dataset
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 69 bp overlap
ZNF263 5 datasets
ChIP HEK293 ENCFF336CWQ 588 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 286 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 185 bp overlap
ChIP HepG2 ENCFF626SSV 254 bp overlap
ChIP HepG2 ENCFF626SSV 358 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 94 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 90 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 482 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 92 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 92 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 366 bp overlap
ChIP HepG2 ENCFF653WIX 341 bp overlap
ZNF777 3 datasets
ChIP Hep-G2 ENCSR068ZQR.ZNF777.Hep-G2 261 bp overlap
ChIP Hep-G2 ENCSR068ZQR.ZNF777.Hep-G2 105 bp overlap
ChIP HepG2 ENCFF362XDA 447 bp overlap