chr1 : 182,942,297 182,942,559
262 bp 115 TFs 1 linked gene
This 262 bp open chromatin element is linked to HMGN1P4 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HMGN1P4 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:182,937,297 – 182,947,559
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 193 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 158 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 262 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 262 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 162 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 241 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 235 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 114 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 231 bp overlap
CBX2 3 datasets
ChIP K-562 ENCSR000ATU.CBX2.K-562 262 bp overlap
ChIP K562 ENCFF578AQI 189 bp overlap
ChIP K562 ENCFF578AQI 262 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 147 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 237 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 150 bp overlap
CTCF 5 datasets
ChIP H1 ENCFF414GZI 211 bp overlap
ChIP H9 ENCFF152GTF 262 bp overlap
ChIP endodermal cell ENCFF471YCZ 192 bp overlap
ChIP neural progenitor cell ENCFF420RBO 262 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 179 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 160 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 262 bp overlap
ChIP BLaER1 ENCFF364PUR 180 bp overlap
E2F6 4 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 226 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 105 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 262 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 262 bp overlap
ERF::FOXI1 3 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
ERG 4 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 208 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 187 bp overlap
EZH2 3 datasets
ChIP ProEs GSE59087.EZH2.ProEs 167 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 160 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 189 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Esrrg 3 datasets
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
Motif DE_24h DE_24h-Esrrg_MA0643.2 9 bp overlap
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 256 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 262 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 262 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 150 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 262 bp overlap
HES1 2 datasets
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
Motif ES_0h ES_0h-HES1_MA1099.3 8 bp overlap
HES2 2 datasets
Motif DE_12h DE_12h-HES2_MA0616.3 9 bp overlap
Motif ES_0h ES_0h-HES2_MA0616.3 9 bp overlap
HES5 2 datasets
Motif DE_12h DE_12h-HES5_MA0821.2 10 bp overlap
Motif ES_0h ES_0h-HES5_MA0821.2 10 bp overlap
HES7 2 datasets
Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap
Motif ES_0h ES_0h-HES7_MA0822.1 12 bp overlap
HEY1 2 datasets
Motif DE_12h DE_12h-HEY1_MA0823.1 10 bp overlap
Motif ES_0h ES_0h-HEY1_MA0823.1 10 bp overlap
HEY2 2 datasets
Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap
Motif ES_0h ES_0h-HEY2_MA0649.2 9 bp overlap
IKZF1 3 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 4 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 224 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 262 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KMT2A 6 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 230 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 262 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 262 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 262 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 241 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 246 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 262 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 209 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
ChIP WTC11 ENCFF223QFY 262 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 262 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 235 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 262 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 262 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
NR2C1 3 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F2 4 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Motif DE_24h DE_24h-NR2F2_MA1111.2 7 bp overlap
Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 255 bp overlap
NR4A1 3 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_24h DE_24h-NR4A1_MA1112.3 8 bp overlap
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 3 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nr1H2 3 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 181 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 262 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 127 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 262 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 242 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 58 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 220 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ppara 3 datasets
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Motif DE_24h DE_24h-Ppara_MA2338.1 7 bp overlap
Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 218 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 236 bp overlap
RNF2 4 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 104 bp overlap
ChIP K562 ENCFF653BQJ 262 bp overlap
ChIP K562 ENCFF653BQJ 262 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 262 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 262 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 262 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 163 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 214 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 262 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 262 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 262 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 245 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 145 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 177 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 221 bp overlap
TBP 1 dataset
ChIP H1 ENCFF859IIO 262 bp overlap
TCFL5 2 datasets
Motif DE_12h DE_12h-TCFL5_MA0632.3 8 bp overlap
Motif ES_0h ES_0h-TCFL5_MA0632.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 257 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 149 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 252 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 216 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 123 bp overlap
USF2 1 dataset
ChIP H1 ENCFF434EDF 245 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 262 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 202 bp overlap
ZBTB14 1 dataset
ChIP HEK293 GSE76494.ZBTB14.HEK293 169 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 262 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 262 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 262 bp overlap
ChIP HEK293 ENCFF752TCU 262 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 190 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCFF968PWB 262 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 166 bp overlap
ChIP HEK293 ENCFF611ZJI 262 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 262 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 262 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 165 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 231 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 133 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 173 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF449 4 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ChIP HEK293 ENCFF764ZIC 248 bp overlap
ChIP HEK293 ENCFF764ZIC 262 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 215 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF680 5 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif DE_24h DE_24h-ZNF680_MA1729.2 11 bp overlap
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ChIP HEK293 ENCFF418WHE 180 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 192 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 261 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 262 bp overlap
ChIP HEK293 ENCFF835SGA 262 bp overlap
Zfp335 4 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap