chr9 : 967,881 968,196
315 bp 99 TFs 1 linked gene
This 315 bp open chromatin element is linked to DMRT3 and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
DMRT3 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:962,881 – 973,196
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 242 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 315 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 315 bp overlap
ASXL1 1 dataset
ChIP HEK293T GSE51673.ASXL1.HEK293T 117 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 88 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 60 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 155 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 292 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 299 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 315 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 315 bp overlap
BRD2 4 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 155 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 125 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 303 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 215 bp overlap
BRD4 6 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 315 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 242 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 229 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 173 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 315 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 244 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 172 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 315 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 268 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 216 bp overlap
COMMD3-BMI1,BMI1 2 datasets
ChIP GM12878 ENCFF249AMT 299 bp overlap
ChIP GM12878 ENCFF249AMT 91 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 149 bp overlap
ChIP H1 ENCFF955PMP 247 bp overlap
ChIP LNCaP GSE63034.CREB1.LNCaP 148 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 152 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 51 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 132 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 63 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 309 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 227 bp overlap
EZH2 16 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 69 bp overlap
ChIP GM23338 ENCFF613YON 315 bp overlap
ChIP GM23338 ENCFF613YON 113 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 166 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 212 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 286 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 257 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 158 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 250 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 215 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 225 bp overlap
ChIP hepatocyte ENCFF118DKH 153 bp overlap
ChIP hepatocyte ENCFF552DZB 246 bp overlap
ChIP hepatocyte ENCFF552DZB 175 bp overlap
ChIP keratinocyte ENCFF070STK 315 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 315 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 266 bp overlap
HSF1 1 dataset
ChIP MO91_CHX_10UM GSE45852.HSF1.MO91_CHX_10UM 178 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 286 bp overlap
ChIP GM12878 ENCFF824TGK 315 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF918AID 166 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 250 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 308 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 315 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 260 bp overlap
KMT2A 3 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 199 bp overlap
ChIP MOLM-13_HOTTIP-KO GSE114981.KMT2A.MOLM-13_HOTTIP-KO 180 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 264 bp overlap
MAX 1 dataset
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 110 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 184 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 123 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 315 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 315 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 199 bp overlap
NFE2L2 1 dataset
ChIP A-375_DMSO GSE57431.NFE2L2.A-375_DMSO 127 bp overlap
NRF1 1 dataset
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 182 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 184 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 315 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 315 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 141 bp overlap
ChIP thyroid gland ENCFF979LRR 306 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 215 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 315 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 173 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 259 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 315 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 293 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 145 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 204 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 129 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 135 bp overlap
RNF2 4 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 315 bp overlap
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 93 bp overlap
ChIP H1 ENCFF239FFS 315 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 212 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 113 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 302 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 271 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 259 bp overlap
ChIP HEK293 ENCFF711QQB 51 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 305 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 305 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 138 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 315 bp overlap
SOX2 3 datasets
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 183 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 315 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 289 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 218 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 79 bp overlap
STAT3 2 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 229 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 277 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 168 bp overlap
SUZ12 6 datasets
ChIP GM12878 ENCFF498QAM 274 bp overlap
ChIP GM12878 ENCFF498QAM 201 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 298 bp overlap
ChIP H1 ENCFF881NFR 224 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 315 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 196 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 315 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 193 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 300 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 137 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 252 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 217 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 149 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF582MWI 315 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 233 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 162 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 229 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 315 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 102 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 162 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 201 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 315 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 178 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 284 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 216 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 173 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 315 bp overlap
ZNF222 1 dataset
ChIP HEK293T GSE78099.ZNF222.HEK293T 315 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 315 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 151 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 134 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 229 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 261 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 315 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 67 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 165 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 126 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 165 bp overlap
ZNF93 1 dataset
ChIP HEK293T GSE78099.ZNF93.HEK293T 184 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 148 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 205 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 192 bp overlap