chr1 : 148,362,424 148,362,945
521 bp 100 TFs 1 linked gene
This 521 bp open chromatin element is linked to RNVU1-1 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RNVU1-1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:148,357,424 – 148,367,945
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ATF2 2 datasets
ChIP HEK293 ENCFF194VKZ 367 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 65 bp overlap
ATF3 3 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 114 bp overlap
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 242 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 129 bp overlap
BCOR 3 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 58 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 246 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 521 bp overlap
BRD4 5 datasets
ChIP SW480 GSE110473.BRD4.SW480 70 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 125 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 140 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 194 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 494 bp overlap
CBX3 2 datasets
ChIP HCT116 ENCFF947BOL 194 bp overlap
ChIP HCT116 ENCFF947BOL 268 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CREB1 5 datasets
ChIP GM23338 ENCFF432ZEW 232 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 197 bp overlap
ChIP H1 ENCFF955PMP 117 bp overlap
ChIP MCF-7 ENCFF867SAS 362 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 247 bp overlap
CREBBP 3 datasets
ChIP LS180_125 GSE39277.CREBBP.LS180_125 192 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 521 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 521 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 93 bp overlap
CTCF 4 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 96 bp overlap
ChIP GM23338 ENCFF772DML 96 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 66 bp overlap
ChIP neural progenitor cell ENCFF420RBO 193 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 204 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000EWJ.E2F6.K-562 135 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 138 bp overlap
EGR1 1 dataset
ChIP HCT116 ENCFF456NPQ 316 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 149 bp overlap
ERG 3 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 186 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 204 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 154 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE48930.ESR1.MCF-7 183 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 119 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 254 bp overlap
EZH2 2 datasets
ChIP SF8628 GSE94834.EZH2.SF8628 235 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 51 bp overlap
FOS 2 datasets
ChIP CD4 GSE116695.FOS.CD4 133 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 158 bp overlap
FOSL1 2 datasets
ChIP HCT116 ENCFF540ZXN 163 bp overlap
ChIP HCT116 ENCFF540ZXN 396 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 138 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF015GDS 353 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 153 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 208 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 241 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 327 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 220 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 161 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 150 bp overlap
ICE1 1 dataset
ChIP HCT-116 GSE47938.ICE1.HCT-116 145 bp overlap
ICE2 1 dataset
ChIP HCT-116 GSE47938.ICE2.HCT-116 153 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 152 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 109 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 150 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 226 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 265 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 242 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 429 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 201 bp overlap
ChIP HCT116 ENCFF748ZQX 165 bp overlap
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 68 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 86 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 231 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 221 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 230 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 153 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 228 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 219 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 451 bp overlap
KLF4 2 datasets
ChIP PDAC GSE64557.KLF4.PDAC 156 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 236 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 237 bp overlap
KLF6 2 datasets
ChIP PDAC GSE64557.KLF6.PDAC 153 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 145 bp overlap
MAF 3 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 84 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 51 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 214 bp overlap
MAFB 1 dataset
ChIP keratinocyte_epidermal_PROLIF GSE52953.MAFB.keratinocyte_epidermal_PROLIF 151 bp overlap
MAML1 2 datasets
ChIP SCC_4h GSE156486.MAML1.SCC_4h 160 bp overlap
ChIP SCC_4h GSE156486.MAML1.SCC_4h 201 bp overlap
MAX 3 datasets
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 161 bp overlap
ChIP HCT116 ENCFF810LEN 303 bp overlap
ChIP WTC11 ENCFF223QFY 390 bp overlap
MAZ 2 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 157 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 163 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 113 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 84 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 521 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 521 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 109 bp overlap
NELFCD 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 93 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 261 bp overlap
NELFE 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 97 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 202 bp overlap
NFATC2 1 dataset
ChIP CD4_CD28-ab GSE116695.NFATC2.CD4_CD28-ab 181 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 521 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 94 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 210 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 69 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 61 bp overlap
POLR2A 17 datasets
ChIP GM12878 ENCFF263VRI 312 bp overlap
ChIP GM12878 ENCFF521FXC 173 bp overlap
ChIP GM12891 ENCFF012SUT 317 bp overlap
ChIP GM12891 ENCFF127ICP 281 bp overlap
ChIP GM12891 ENCFF379FCI 276 bp overlap
ChIP GM18505 ENCFF311CYB 291 bp overlap
ChIP GM23338 ENCFF450WCS 188 bp overlap
ChIP H1 ENCFF566JSR 231 bp overlap
ChIP H1 ENCFF770YBQ 270 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 226 bp overlap
ChIP HCT116 ENCFF508RDJ 231 bp overlap
ChIP HepG2 ENCFF718XAJ 260 bp overlap
ChIP Panc1 ENCFF290KAB 199 bp overlap
ChIP Raji ENCFF613VGX 150 bp overlap
ChIP transverse colon ENCFF193UMS 229 bp overlap
ChIP transverse colon ENCFF610RWV 339 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 234 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 179 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 470 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 54 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 259 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 145 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 149 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 234 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 50 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 246 bp overlap
SIN3A 3 datasets
ChIP HCT116 ENCFF203YBB 87 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 234 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 255 bp overlap
SMAD3 3 datasets
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 216 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 190 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 173 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 156 bp overlap
SNAPC1 1 dataset
ChIP MCF-10A GSE37403.SNAPC1.MCF-10A 82 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 182 bp overlap
SP1 5 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 165 bp overlap
ChIP HCT116 ENCFF800LBN 271 bp overlap
ChIP HCT116 ENCFF800LBN 437 bp overlap
ChIP HCT116 ENCFF800LBN 277 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 228 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 254 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 229 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 200 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 157 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 521 bp overlap
SRF 1 dataset
ChIP HCT116 ENCFF497JOF 221 bp overlap
STAT3 1 dataset
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 150 bp overlap
SUPT5H 9 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 130 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 267 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 102 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 214 bp overlap
ChIP DLD-1_NELFE-AID_treated GSE144786.SUPT5H.DLD-1_NELFE-AID_treated 76 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 67 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 89 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 68 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 245 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 114 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 216 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 160 bp overlap
TAF7 3 datasets
ChIP H1 ENCFF061XZZ 142 bp overlap
ChIP K-562 ENCSR000BNM.TAF7.K-562 75 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 144 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 174 bp overlap
TBP 6 datasets
ChIP GM12878 ENCFF571OXR 270 bp overlap
ChIP GM12878 ENCFF571OXR 384 bp overlap
ChIP H1 ENCFF859IIO 294 bp overlap
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP HBTEC_MOI20_18hpi GSE116772.TBP.HBTEC_MOI20_18hpi 399 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 214 bp overlap
TP53 3 datasets
ChIP HCT-116_Nutlin3a GSE125927.TP53.HCT-116_Nutlin3a 169 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 71 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 75 bp overlap
TP63 1 dataset
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 210 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 134 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 245 bp overlap
ZBTB21 2 datasets
ChIP HEK293 ENCFF509WYZ 203 bp overlap
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 230 bp overlap
ZBTB33 3 datasets
ChIP HCT-116 ENCSR000BNY.ZBTB33.HCT-116 62 bp overlap
ChIP HCT116 ENCFF847AJN 58 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 70 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 195 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 91 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZC3H8 2 datasets
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 145 bp overlap
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 157 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 204 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 306 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 276 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 63 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 235 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 372 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 145 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 326 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 189 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 231 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 264 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 196 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 269 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 195 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 391 bp overlap