chr7 : 515,390 516,162
772 bp 84 TFs 4 linked genes
This 772 bp open chromatin element is linked to 4 target genes and is bound by 84 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
PDGFA 4.0 kb Proximal Proximity
PDGFA-DT 4.2 kb Proximal Proximity
DNAAF5 210.8 kb Distal Multiome
PRKAR1B 211.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:510,390 – 521,162
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 95 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 618 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 66 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 340 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 551 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 347 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 579 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 66 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 197 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 234 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 263 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 155 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 558 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 582 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 58 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 337 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 134 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 430 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 71 bp overlap
ChIP BLaER1 ENCFF274GAT 251 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 133 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 257 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 178 bp overlap
ESR1 1 dataset
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 252 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 466 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 127 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 126 bp overlap
EZH2 2 datasets
ChIP SK-N-MC ENCFF674XUJ 133 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 271 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 178 bp overlap
GABPA 4 datasets
ChIP H1 ENCFF739QFD 200 bp overlap
ChIP H1 ENCFF739QFD 341 bp overlap
ChIP H1 ENCFF739QFD 341 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 352 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 54 bp overlap
GATA2 4 datasets
ChIP ESF GSE108408.GATA2.ESF 105 bp overlap
ChIP K562 ENCFF513FTZ 51 bp overlap
ChIP SH-SY5Y ENCFF485YIB 95 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 64 bp overlap
GATA3 1 dataset
ChIP T-47D GSE51274.GATA3.T-47D 65 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 196 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 322 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 772 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 259 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 180 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 256 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 160 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 401 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 471 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 228 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 534 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 379 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 339 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 447 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 363 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 410 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 231 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 582 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 314 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 337 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 466 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 403 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 312 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 183 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 241 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 216 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 191 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 316 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 553 bp overlap
PCGF1 2 datasets
ChIP WA01 GSE104690.PCGF1.WA01 119 bp overlap
ChIP WA01 GSE104690.PCGF1.WA01 568 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 477 bp overlap
ChIP H1 ENCFF566JSR 209 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 8 datasets
ChIP BG03 GSE21614.POU5F1.BG03 192 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 562 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 429 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 159 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 536 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 260 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 178 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 505 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 186 bp overlap
RAD21 3 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 191 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 541 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 256 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 406 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 200 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 60 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 243 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 153 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 258 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 294 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 316 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 306 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 171 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 211 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 204 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 651 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 333 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 340 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 254 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 586 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 58 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 143 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 276 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 248 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 300 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SS18 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 196 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 308 bp overlap
SUZ12 1 dataset
ChIP WA01 ENCSR000ATS.SUZ12.WA01 192 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 236 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 222 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 479 bp overlap
TBP 7 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 221 bp overlap
ChIP hESC GSE122298.TBP.hESC 89 bp overlap
ChIP hESC GSE122298.TBP.hESC 495 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 204 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 439 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 212 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 165 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 546 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 385 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 261 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 341 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 262 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 280 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 197 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 150 bp overlap
ChIP K562 ENCFF053XDV 286 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 169 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 88 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 91 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 51 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 139 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 334 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 256 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 352 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF740 4 datasets
ChIP K-562 ENCSR737UST.ZNF740.K-562 244 bp overlap
ChIP K562 ENCFF505NFV 291 bp overlap
ChIP K562 ENCFF505NFV 90 bp overlap
ChIP K562 ENCFF913GVQ 248 bp overlap