chr6 : 47,428,686 47,429,150
464 bp 105 TFs 2 linked genes
This 464 bp open chromatin element is linked to CD2AP and TNFRSF21 and is bound by 105 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CD2AP 48.7 kb Distal Multiome
TNFRSF21 119.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:47,423,686 – 47,434,150
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 289 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BRD4 2 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 340 bp overlap
ChIP hESC GSE33281.BRD4.hESC 176 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 148 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 236 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 170 bp overlap
CEBPD 1 dataset
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 183 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 253 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 464 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 226 bp overlap
CTCF 32 datasets
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF531QOI 172 bp overlap
ChIP GM23338 ENCFF772DML 188 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 78 bp overlap
ChIP H9 ENCFF152GTF 445 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 276 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 246 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 225 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 290 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 210 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 250 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 242 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 265 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 248 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 124 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 129 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 357 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 219 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 122 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 235 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 217 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 255 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 215 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 241 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 249 bp overlap
CTCFL 1 dataset
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 271 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 83 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 362 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 459 bp overlap
GLIS2 2 datasets
Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 328 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 338 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 114 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 104 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 191 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAX 2 datasets
ChIP P493-6 GSE36354.MAX.P493-6 341 bp overlap
ChIP WTC11 ENCFF223QFY 464 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 285 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 140 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 392 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 321 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 191 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 370 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 298 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 297 bp overlap
ChIP hESC GSE20650.NANOG.hESC 154 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
PAX3 1 dataset
Motif ES_0h ES_0h-PAX3_MA1546.2 14 bp overlap
PLAG1 2 datasets
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
ChIP K-562 GSE111469.PLAG1.K-562 200 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F1 1 dataset
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 198 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 266 bp overlap
ChIP H1 ENCFF698ZAP 145 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 464 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 464 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 157 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 353 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 415 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 200 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RAD21 20 datasets
ChIP H1 ENCFF698EWO 185 bp overlap
ChIP H1 ENCFF967OJF 72 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 277 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 219 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 146 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 107 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 261 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 249 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 239 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 239 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 231 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 223 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 233 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 213 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 227 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 252 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 142 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 301 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 150 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 150 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD1 2 datasets
ChIP BG03 GSE36578.SMAD1.BG03 144 bp overlap
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 179 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 213 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 267 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 327 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 141 bp overlap
SOX13 1 dataset
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 285 bp overlap
SOX2 3 datasets
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 290 bp overlap
SP1 4 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 163 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 134 bp overlap
ChIP WTC11 ENCFF688PEU 422 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 207 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF843EBZ 301 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 288 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 226 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 211 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 464 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 176 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 125 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZIC1 1 dataset
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 357 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 344 bp overlap
ZNF189 1 dataset
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF331 2 datasets
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 214 bp overlap
ZNF454 1 dataset
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 408 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 285 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF770 1 dataset
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap