chr6 : 30,074,478 30,074,831
353 bp 103 TFs 2 linked genes
This 353 bp open chromatin element is linked to RNF39 and PPP1R11 and is bound by 103 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RNF39 1.0 kb Proximal Proximity
PPP1R11 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:30,069,478 – 30,079,831
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 111 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 217 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 168 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF773YDL 336 bp overlap
AR 3 datasets
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 322 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 104 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 176 bp overlap
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 76 bp overlap
ChIP HepG2 ENCFF317ZHO 126 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 93 bp overlap
ChIP H1 ENCFF399KAM 93 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 353 bp overlap
ATF7,NPFF 1 dataset
ChIP HepG2 ENCFF068SVI 353 bp overlap
BATF2 1 dataset
ChIP HepG2 ENCFF442RPJ 51 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 353 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 199 bp overlap
BRD2 1 dataset
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 97 bp overlap
BRD4 4 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 216 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 147 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 121 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 161 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 353 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 233 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 94 bp overlap
CREBBP 2 datasets
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 129 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 242 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 293 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 353 bp overlap
CTCF 7 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 106 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 247 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 73 bp overlap
ChIP RWPE2 ENCFF911IEE 88 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 158 bp overlap
ChIP prostate gland ENCFF979KAF 223 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 162 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 82 bp overlap
ChIP BLaER1 ENCFF460KDD 60 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 199 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 67 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 113 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 122 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 306 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 112 bp overlap
EP300 2 datasets
ChIP H1 ENCFF937OPV 124 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 80 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 140 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 93 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 182 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 242 bp overlap
EZH2 14 datasets
ChIP A673 ENCFF790MVL 181 bp overlap
ChIP A673 ENCFF955JRZ 181 bp overlap
ChIP B cell ENCFF803EMO 182 bp overlap
ChIP SK-N-MC ENCFF434OHW 189 bp overlap
ChIP SK-N-MC ENCFF674XUJ 189 bp overlap
ChIP T98G GSE112240.EZH2.T98G 353 bp overlap
ChIP astrocyte ENCFF365JTP 353 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 80 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 201 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 353 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 353 bp overlap
ChIP fibroblast of lung ENCFF479BAW 103 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 76 bp overlap
ChIP neural progenitor cell ENCFF472NFV 273 bp overlap
FOS 2 datasets
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 164 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 110 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 249 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 189 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 274 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 334 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 118 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 353 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 335 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF939VKA 128 bp overlap
ChIP H1 ENCFF939VKA 161 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 114 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 349 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 342 bp overlap
ChIP HepG2 ENCFF493GNS 238 bp overlap
HNRNPLL 1 dataset
ChIP HepG2 ENCFF952XAB 315 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 123 bp overlap
IRF9 1 dataset
ChIP HepG2 ENCFF654ZCV 353 bp overlap
JUN 4 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 107 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 149 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 315 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 324 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 151 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 66 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 307 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 122 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 159 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 353 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 353 bp overlap
KLF5 2 datasets
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 232 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 353 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 215 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 321 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 184 bp overlap
ChIP K-562_HS GSE112379.NELFE.K-562_HS 93 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 174 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 203 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 167 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 144 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 122 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 99 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 353 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 138 bp overlap
POLR2A 8 datasets
ChIP breast epithelium ENCFF110TAD 184 bp overlap
ChIP breast epithelium ENCFF955FMX 250 bp overlap
ChIP prostate gland ENCFF832RQK 198 bp overlap
ChIP prostate gland ENCFF832RQK 250 bp overlap
ChIP prostate gland ENCFF881OMH 173 bp overlap
ChIP prostate gland ENCFF882MXU 290 bp overlap
ChIP vagina ENCFF384GAB 236 bp overlap
ChIP vagina ENCFF384GAB 236 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 353 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 353 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 353 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 353 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 353 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 87 bp overlap
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 74 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 351 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 101 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 156 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 70 bp overlap
RNF2 3 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 167 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 136 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 353 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 353 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 278 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 165 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 114 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 353 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 269 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 169 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 206 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 150 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 265 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 353 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 326 bp overlap
SP1 3 datasets
ChIP HEK293 GSE76494.SP1.HEK293 353 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 294 bp overlap
ChIP WTC11 ENCFF688PEU 187 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 353 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 256 bp overlap
SP4 2 datasets
ChIP HEK293 GSE76494.SP4.HEK293 308 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 114 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 146 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 210 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 125 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 182 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 118 bp overlap
SUZ12 4 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 117 bp overlap
ChIP H1 ENCFF881NFR 317 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 119 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 249 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 193 bp overlap
TBP 3 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 169 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 99 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 132 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 123 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 70 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 353 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 102 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 309 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 353 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 180 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 199 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 243 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 157 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 65 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 59 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 159 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 59 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 227 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 278 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 353 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 148 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 334 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 353 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 215 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 353 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 75 bp overlap
ZSCAN25 1 dataset
ChIP HepG2 ENCFF265FLD 179 bp overlap