chr6 : 21,601,865 21,602,374
509 bp 104 TFs 3 linked genes
This 509 bp open chromatin element is linked to BOLA2P3, ENSG00000283480, and SOX4 and is bound by 104 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
BOLA2P3 at TSS At TSS Proximity
ENSG00000283480 6.3 kb Proximal Proximity
SOX4 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:21,596,865 – 21,607,374
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 378 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 378 bp overlap
AR 3 datasets
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 375 bp overlap
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 272 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 292 bp overlap
ARNTL 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR949COJ.ARNTL.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 377 bp overlap
ASXL1 3 datasets
ChIP HEK293T GSE51673.ASXL1.HEK293T 167 bp overlap
ChIP HEK293T GSE51673.ASXL1.HEK293T 115 bp overlap
ChIP HEK293T GSE51673.ASXL1.HEK293T 64 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 355 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 345 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 125 bp overlap
BRD4 8 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 509 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 215 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 274 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 66 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 119 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP hESC GSE33281.BRD4.hESC 78 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 206 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 331 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 159 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 117 bp overlap
CEBPB 2 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 92 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 107 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 145 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 273 bp overlap
CTCF 7 datasets
ChIP DND-41 ENCFF913MRA 238 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 222 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 211 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 176 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 206 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 118 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
Cebpa 7 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF093OYK 427 bp overlap
ChIP BLaER1 ENCFF274GAT 125 bp overlap
ChIP BLaER1 ENCFF335XTP 219 bp overlap
ChIP BLaER1 ENCFF346MCV 128 bp overlap
ChIP BLaER1 ENCFF364PUR 506 bp overlap
ChIP BLaER1 ENCFF858JKM 298 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 84 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 196 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 418 bp overlap
ERG 2 datasets
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 266 bp overlap
ESR1 13 datasets
Motif ES_0h ES_0h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 300 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 332 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 376 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 164 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 214 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 237 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 414 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 386 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 256 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 488 bp overlap
ChIP MCF-7_shCtrl_TamR GSE128445.ESR1.MCF-7_shCtrl_TamR 269 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 342 bp overlap
ESR1_pS118 2 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 457 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 250 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH ENCFF394HLU 285 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 444 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 261 bp overlap
FLI1 2 datasets
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 432 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 275 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 438 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 368 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 418 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 244 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 509 bp overlap
IFNA1 2 datasets
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 240 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 154 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 278 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 265 bp overlap
JUN 1 dataset
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 221 bp overlap
JUND 2 datasets
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 130 bp overlap
ChIP MCF-7 ENCFF450KFZ 401 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM5B 3 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 60 bp overlap
ChIP HCC2157 GSE46055.KDM5B.HCC2157 254 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 168 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 209 bp overlap
KMT2A 1 dataset
ChIP RS4-11 GSE38403.KMT2A.RS4-11 326 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 182 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 188 bp overlap
MECP2 1 dataset
ChIP cortical-interneuron GSE117508.MECP2.cortical-interneuron 316 bp overlap
MED1 3 datasets
ChIP Jurkat GSE59657.MED1.Jurkat 88 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 387 bp overlap
MORC2 2 datasets
ChIP H9 GSE95374.MORC2.H9 62 bp overlap
ChIP H9 GSE95374.MORC2.H9 263 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 158 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 169 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 203 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 261 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 509 bp overlap
NEUROD1 4 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 314 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 361 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 51 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 250 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 176 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 220 bp overlap
NRF1 1 dataset
ChIP H1 ENCFF582PEJ 245 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 398 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 293 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 323 bp overlap
POLR2A 9 datasets
ChIP GM12878 ENCFF521FXC 308 bp overlap
ChIP H1 ENCFF566JSR 254 bp overlap
ChIP H1 ENCFF566JSR 51 bp overlap
ChIP IMR-90 ENCFF672YWV 268 bp overlap
ChIP IMR-90 ENCFF672YWV 497 bp overlap
ChIP MCF-7 ENCFF309IKZ 331 bp overlap
ChIP neural cell ENCFF604SPB 164 bp overlap
ChIP neural cell ENCFF604SPB 367 bp overlap
ChIP spleen ENCFF706IUS 161 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 212 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 326 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 193 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 157 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 435 bp overlap
PPARA 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 301 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 62 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 227 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 509 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 227 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 135 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 224 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 224 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 445 bp overlap
ChIP epididymis_HEE_R1881 GSE109061.RUNX1.epididymis_HEE_R1881 194 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 441 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 441 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 64 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 214 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 330 bp overlap
SMC3 2 datasets
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 128 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 509 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 210 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 232 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 404 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 208 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 208 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 275 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 134 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 378 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 364 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 412 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 257 bp overlap
TSHZ2 3 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH ENCFF182EBB 266 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 393 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 347 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 238 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 192 bp overlap
ZBTB33 3 datasets
ChIP GM12878 ENCFF818EFA 255 bp overlap
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 509 bp overlap
ChIP MCF-7 ENCFF622BUU 321 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 69 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 158 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 324 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 331 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 146 bp overlap
ZNF202 2 datasets
ChIP HEK293 ENCFF574FZA 291 bp overlap
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 242 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF565 1 dataset
ChIP SK-N-SH ENCFF372UGG 277 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap