chr5 : 98,772,278 98,772,735
457 bp 118 TFs 2 linked genes
This 457 bp open chromatin element is linked to RGMB-AS1 and RGMB and is bound by 118 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
RGMB-AS1 733 bp At TSS Proximity
RGMB 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:98,767,278 – 98,777,735
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 328 bp overlap
ATF2 1 dataset
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
BACH2 1 dataset
Motif DE_60h DE_60h-BACH2_MA1470.2 19 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 271 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 359 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 169 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 244 bp overlap
BRD4 1 dataset
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 457 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 223 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 457 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 125 bp overlap
CREB1 1 dataset
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
CTCF 12 datasets
ChIP C4-2B ENCFF821XVN 54 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 318 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 205 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 209 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 263 bp overlap
ChIP K562 ENCFF598YSU 83 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 146 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 166 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 257 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 126 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 130 bp overlap
ChIP heart right ventricle ENCFF027ORH 166 bp overlap
E2F7 1 dataset
ChIP IMR-90_SENES_SHCTR GSE40343.E2F7.IMR-90_SENES_SHCTR 138 bp overlap
EGR1 2 datasets
Motif DE_48h DE_48h-EGR1_MA0162.5 10 bp overlap
Motif DE_60h DE_60h-EGR1_MA0162.5 10 bp overlap
EGR4 2 datasets
Motif DE_48h DE_48h-EGR4_MA0733.2 11 bp overlap
Motif DE_60h DE_60h-EGR4_MA0733.2 11 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 102 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 237 bp overlap
EOMES 1 dataset
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ETS1 4 datasets
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 99 bp overlap
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 240 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 183 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 292 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 457 bp overlap
ChIP DOHH2 ENCFF528GDC 323 bp overlap
ChIP DOHH2 ENCFF528GDC 322 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 272 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 361 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 209 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 220 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 358 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 150 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 271 bp overlap
ChIP DE DE-GATA4-1 333 bp overlap
ChIP DE DE-GATA4-2 391 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 363 bp overlap
ChIP foregut GSE117136.GATA4.foregut 248 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 397 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 215 bp overlap
ChIP DE DE-GATA6-1 322 bp overlap
ChIP DE DE-GATA6-2 345 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 284 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 299 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 457 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 337 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 357 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 355 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 280 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 117 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 382 bp overlap
INSM2 2 datasets
ChIP HEK293 ENCFF008ZWC 381 bp overlap
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 341 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 297 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCFF551NEQ 179 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 324 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 267 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 338 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 249 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 383 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 411 bp overlap
KLF4 2 datasets
ChIP PDAC GSE64557.KLF4.PDAC 179 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 229 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 266 bp overlap
KMT2A 1 dataset
ChIP SHI-1 GSE95511.KMT2A.SHI-1 161 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 183 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 388 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 457 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 294 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 150 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 2 datasets
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 182 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 204 bp overlap
NKX2-8 2 datasets
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Nkx2-1 1 dataset
Motif DE_60h DE_60h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 182 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 353 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 378 bp overlap
PHIP 8 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 117 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 184 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 132 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 341 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 457 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 100 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 61 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 171 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 340 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 166 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 370 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 208 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 71 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 265 bp overlap
PRDM9 2 datasets
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 2 datasets
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 171 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 275 bp overlap
RNF2 2 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 138 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 126 bp overlap
RUNX3 1 dataset
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 169 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 342 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 365 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 239 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 335 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 189 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 457 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 457 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 457 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 316 bp overlap
SUPT16H 2 datasets
ChIP hiF-T GSE98758.SUPT16H.hiF-T 273 bp overlap
ChIP hiF-T GSE98758.SUPT16H.hiF-T 115 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 384 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
WDR5 1 dataset
ChIP breast-cancer_shLuc GSE113279.WDR5.breast-cancer_shLuc 382 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 374 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 222 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 172 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 389 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 400 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 457 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 389 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 243 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 367 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 297 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 267 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 338 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 179 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 360 bp overlap
ZNF211 1 dataset
Motif DE_60h DE_60h-ZNF211_MA1974.2 10 bp overlap
ZNF214 1 dataset
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 290 bp overlap
ZNF282 2 datasets
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 313 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 457 bp overlap
ZNF530 2 datasets
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 208 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 269 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCFF096ELQ 233 bp overlap
ZNF784 1 dataset
Motif DE_60h DE_60h-ZNF784_MA1717.2 8 bp overlap
ZNF816 2 datasets
Motif DE_48h DE_48h-ZNF816_MA1719.2 15 bp overlap
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 382 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 379 bp overlap
ZSCAN31 1 dataset
ChIP HepG2 ENCFF066FRL 95 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 370 bp overlap