chr5 : 36,607,999 36,608,339
340 bp 100 TFs 1 linked gene
This 340 bp open chromatin element is linked to SLC1A3 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SLC1A3 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:36,602,999 – 36,613,339
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa GSE40632.AFF4.HeLa 166 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 193 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 136 bp overlap
ATF3 1 dataset
ChIP primary-dermal-fibroblasts_overexpressed GSE81403.ATF3.primary-dermal-fibroblasts_overexpressed 188 bp overlap
BRD2 2 datasets
ChIP SUM159PT_JQ1 GSE116879.BRD2.SUM159PT_JQ1 196 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 278 bp overlap
BRD4 21 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 340 bp overlap
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 172 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 94 bp overlap
ChIP Hep-G2 GSE123097.BRD4.Hep-G2 312 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 159 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 340 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 190 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 66 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 338 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 340 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 340 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 221 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 277 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 340 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 340 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 336 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 258 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 340 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 340 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 316 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 340 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 212 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 257 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 223 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 253 bp overlap
CEBPA 8 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 255 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 230 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 219 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 322 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 340 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 215 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 191 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 253 bp overlap
CEBPB 16 datasets
ChIP H1 ENCFF871PTR 248 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 340 bp overlap
ChIP HeLa-S3 ENCFF722WEG 211 bp overlap
ChIP Hep-G2 GSE123097.CEBPB.Hep-G2 340 bp overlap
ChIP Ishikawa ENCFF010USJ 67 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 205 bp overlap
ChIP MCF-7 ENCFF772ZTQ 263 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 337 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 217 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 180 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 231 bp overlap
ChIP hMSC GSE68864.CEBPB.hMSC 239 bp overlap
ChIP monocyte GSE98367.CEBPB.monocyte 150 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 196 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 195 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 143 bp overlap
CHD2 2 datasets
ChIP HeLa-S3 ENCFF078QRQ 269 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 119 bp overlap
CRY1 3 datasets
ChIP U2OS GSE130602.CRY1.U2OS 273 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 272 bp overlap
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 237 bp overlap
CTCF 5 datasets
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 190 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 196 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 243 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 340 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 185 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 252 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 197 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCFF089VPQ 227 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 182 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 221 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 340 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 142 bp overlap
GATA2 2 datasets
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 204 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 186 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 224 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 182 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 288 bp overlap
GFI1 3 datasets
ChIP NB4 GSE128528.GFI1.NB4 340 bp overlap
ChIP THP-1 GSE90769.GFI1.THP-1 234 bp overlap
ChIP THP-1_OG86 GSE90769.GFI1.THP-1_OG86 288 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 187 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 340 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 121 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 208 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 232 bp overlap
HDAC1 2 datasets
ChIP NB4 GSE126720.HDAC1.NB4 63 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 136 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 340 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF854JLR 216 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 174 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 266 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 207 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 51 bp overlap
ChIP HL-60 GSE63484.JMJD1C.HL-60 159 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 167 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 171 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 131 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 204 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 340 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 261 bp overlap
MAX 7 datasets
ChIP HeLa-S3 ENCFF398RFF 322 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 205 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 129 bp overlap
ChIP Ishikawa ENCFF064TDQ 340 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 139 bp overlap
ChIP NB4 ENCFF966MWB 266 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 239 bp overlap
MED1 4 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 97 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 233 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 180 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 161 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 103 bp overlap
MYC 4 datasets
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 148 bp overlap
ChIP Kelly GSE138295.MYC.Kelly 273 bp overlap
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 199 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 281 bp overlap
MYCN 11 datasets
ChIP BE2C GSE80151.MYCN.BE2C 310 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 173 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 240 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 264 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 249 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 310 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 195 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 279 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 304 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 306 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 150 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 322 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 228 bp overlap
NR3C1 3 datasets
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 120 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 193 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 178 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 70 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 98 bp overlap
POU5F1 3 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 340 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 132 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 276 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 188 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 147 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 311 bp overlap
ChIP HeLa-S3 ENCFF775CHI 172 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 169 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 220 bp overlap
RELA 3 datasets
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 78 bp overlap
ChIP SGBS GSE64233.RELA.SGBS 161 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 173 bp overlap
RNF2 3 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 112 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 288 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 182 bp overlap
RUNX1 3 datasets
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 165 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 174 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 194 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 264 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 255 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 298 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 259 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 126 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 249 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 220 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 216 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 340 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 329 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 194 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 211 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 170 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 88 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 144 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 144 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 144 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 194 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 261 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 164 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 338 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 340 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 340 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 340 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 135 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 340 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 119 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 132 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF084KRL 118 bp overlap
ChIP HeLa-S3 ENCFF673QAB 117 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 198 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 161 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 142 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 323 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 333 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 158 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 196 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 258 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 131 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 281 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 340 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 340 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 270 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 175 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 179 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 153 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCFF184XEW 302 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 250 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 183 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 315 bp overlap
ZNF714 1 dataset
ChIP HEK293T GSE78099.ZNF714.HEK293T 308 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 284 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 340 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 340 bp overlap