chr3 : 196,533,242 196,533,647
405 bp 92 TFs 1 linked gene
This 405 bp open chromatin element is linked to NAA50P2 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NAA50P2 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:196,528,242 – 196,538,647
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 124 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 170 bp overlap
ChIP K562 ENCFF938UXQ 209 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 233 bp overlap
ATF2 1 dataset
ChIP H1 ENCFF295GZO 405 bp overlap
BCL11A 1 dataset
ChIP H1 ENCFF833IPY 145 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 169 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 182 bp overlap
BRD4 1 dataset
ChIP HEK293T GSE51633.BRD4.HEK293T 131 bp overlap
CEBPB 1 dataset
ChIP H1 ENCFF871PTR 261 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 127 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 405 bp overlap
ChIP H1 ENCFF126NLU 373 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 405 bp overlap
CREB1 1 dataset
ChIP H1 ENCFF955PMP 298 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 114 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 327 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 217 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 325 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000BLI.E2F6.K-562 79 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 182 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 203 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 261 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 381 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 331 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 143 bp overlap
GATA2 5 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 314 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 193 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 369 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 216 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 340 bp overlap
ChIP DE DE-GATA4-2 339 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 322 bp overlap
ChIP DE DE-GATA6-2 340 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 405 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 405 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 137 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 353 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 312 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 247 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 340 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 233 bp overlap
GLIS2 3 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
ChIP HEK293 ENCFF446EIF 192 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 216 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 300 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 110 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 171 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 145 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 107 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HMBOX1 1 dataset
ChIP K562 ENCFF055GAZ 383 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 292 bp overlap
ChIP K562 ENCFF771OHZ 254 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 142 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 151 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 405 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 405 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 405 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 405 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 370 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 350 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 258 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 98 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 119 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 391 bp overlap
ChIP K562 ENCFF128TYE 246 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 255 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 102 bp overlap
MAZ 2 datasets
ChIP K-562 ENCSR000EFX.MAZ.K-562 122 bp overlap
ChIP K-562 ENCSR163IUV.MAZ.K-562 100 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 260 bp overlap
MYC 2 datasets
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 121 bp overlap
ChIP K-562 ENCSR000EGJ.MYC.K-562 103 bp overlap
MYCN 5 datasets
ChIP BE2C GSE80151.MYCN.BE2C 113 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 146 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 133 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 143 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 111 bp overlap
NANOG 5 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 405 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 405 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 156 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 146 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 226 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 405 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 405 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 297 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 358 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 340 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 8 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 254 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 240 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 245 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 240 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 255 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 115 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 115 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 128 bp overlap
REST 3 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 139 bp overlap
ChIP K562 ENCFF430APM 129 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 124 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 392 bp overlap
ChIP K562 ENCFF653BQJ 189 bp overlap
RXRA 2 datasets
ChIP H1 ENCFF570NHK 201 bp overlap
ChIP WA01 ENCSR000BJW.RXRA.WA01 215 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 285 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 318 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 288 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 342 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 405 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 405 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 405 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 405 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 362 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 298 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 183 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 170 bp overlap
ChIP WTC11 ENCFF815YYQ 229 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 168 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 153 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 135 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 125 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 302 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 307 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 189 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 282 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 173 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 169 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 326 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 122 bp overlap
TAL1 4 datasets
ChIP K-562 GSE107726.TAL1.K-562 162 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 121 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 125 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 138 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 196 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 183 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 134 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 405 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 310 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 396 bp overlap
ChIP H1 ENCFF778PAX 128 bp overlap
TFDP1 1 dataset
ChIP K-562 ENCSR224IKA.TFDP1.K-562 111 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 54 bp overlap
ChIP K562 ENCFF633EZB 121 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 187 bp overlap
ChIP WTC11 ENCFF699QGS 154 bp overlap
USF2 2 datasets
ChIP H1 ENCFF434EDF 132 bp overlap
ChIP WTC11 ENCFF139JAW 275 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
YY1 4 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 198 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 207 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 111 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 145 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 172 bp overlap
ZBTB7A 2 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 130 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 122 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 183 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 199 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 405 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 156 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 64 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap