chr3 : 29,256,134 29,256,685
551 bp 98 TFs 0 linked genes
This 551 bp open chromatin element has no linked target genes and is bound by 98 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:29,251,134 – 29,261,685
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 449 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 544 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 424 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 188 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCFF037PYH 362 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 125 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 206 bp overlap
BCL6B 1 dataset
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 225 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 201 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 236 bp overlap
BRD4 16 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 529 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 309 bp overlap
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 295 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 234 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 501 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 501 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 201 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 201 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 143 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 459 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 255 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 243 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 215 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 336 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 212 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 276 bp overlap
CDK9 1 dataset
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 248 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 417 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 220 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 419 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 488 bp overlap
EP300 4 datasets
ChIP GM12878 ENCFF242HCG 300 bp overlap
ChIP HeLa-S3 ENCFF089VPQ 325 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 260 bp overlap
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 172 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 252 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 329 bp overlap
FOS 3 datasets
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 172 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 83 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 316 bp overlap
FOSL2 1 dataset
ChIP SK-N-SH ENCFF127ZDW 65 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 281 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 429 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 343 bp overlap
FOXL2 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 463 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 303 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 191 bp overlap
GATA2 4 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 196 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 189 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 171 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 286 bp overlap
GATA3 3 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 198 bp overlap
ChIP SK-N-SH ENCFF040SSB 218 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 157 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 217 bp overlap
ChIP DE DE-GATA4-1 279 bp overlap
ChIP DE DE-GATA4-2 294 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 425 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 203 bp overlap
GATA6 6 datasets
ChIP AGS GSE51705.GATA6.AGS 371 bp overlap
ChIP DE DE-GATA6-1 248 bp overlap
ChIP DE DE-GATA6-2 305 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 265 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 170 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 222 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 184 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 381 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 193 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 421 bp overlap
ChIP GM12878 ENCFF918AID 451 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 430 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 413 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 243 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 117 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 89 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 275 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 146 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 152 bp overlap
KLF13 1 dataset
ChIP HEK293 ENCSR946ZLI.KLF13.HEK293 100 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 159 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 268 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 551 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 133 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 155 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 187 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 292 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 379 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 253 bp overlap
MYB 2 datasets
ChIP MOLT-3 GSE59657.MYB.MOLT-3 245 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 273 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 349 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 428 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 259 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 452 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 383 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 369 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 197 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 231 bp overlap
NFYB 2 datasets
ChIP HeLa-S3 ENCFF854TNJ 357 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 185 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 178 bp overlap
NR3C1 7 datasets
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 467 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 240 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 551 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 494 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 359 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 218 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 233 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 235 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 236 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 310 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 101 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 358 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 304 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 217 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 269 bp overlap
RELA 2 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 236 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 357 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 176 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 289 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 444 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 221 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCFF893DLM 103 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 267 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 267 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 396 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 319 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 281 bp overlap
SMAD4 1 dataset
ChIP HGrC1_WT-TGF GSE138496.SMAD4.HGrC1_WT-TGF 181 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 229 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 218 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 228 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 234 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 317 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 191 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 143 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 269 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 511 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 405 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 175 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 174 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 120 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 493 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 551 bp overlap
SPI1 4 datasets
ChIP GM12878 ENCFF134LCP 224 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 181 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 193 bp overlap
STAT3 8 datasets
ChIP HeLa-S3 ENCFF655DGU 337 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 193 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 142 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 183 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 175 bp overlap
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 228 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 301 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 294 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 283 bp overlap
TBX21 3 datasets
ChIP GM12878 ENCFF951HUW 153 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 317 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 168 bp overlap
USF1 8 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 155 bp overlap
ChIP HCT116 ENCFF330PYP 365 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 104 bp overlap
ChIP SK-N-SH ENCFF967PDP 311 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 259 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 140 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 176 bp overlap
USF2 5 datasets
ChIP GM12878 GSE97661.USF2.GM12878 234 bp overlap
ChIP HeLa-S3 ENCFF765YUZ 291 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 216 bp overlap
ChIP IMR-90 ENCFF438KUN 257 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 190 bp overlap
YY1AP1 1 dataset
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 257 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 107 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 171 bp overlap
ZNF350 3 datasets
ChIP HEK293 ENCFF428BAO 121 bp overlap
ChIP HEK293 ENCSR854ORP.ZNF350.HEK293 329 bp overlap
ChIP HEK293 GSE76494.ZNF350.HEK293 209 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 58 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 515 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 378 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 316 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 177 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 551 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 342 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 551 bp overlap