chr2 : 47,357,404 47,357,893
489 bp 106 TFs 5 linked genes
This 489 bp open chromatin element is linked to 5 target genes and is bound by 106 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
EPCAM 11.7 kb Distal Multiome
EPCAM-DT 12.5 kb Distal Multiome
MSH2 45.5 kb Distal Multiome
CALM2 181.1 kb Distal Multiome
KCNK12 213.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:47,352,404 – 47,362,893
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 305 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 332 bp overlap
ChIP K562 ENCFF938UXQ 442 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 388 bp overlap
ATF2 2 datasets
ChIP K-562 ENCSR869IUD.ATF2.K-562 237 bp overlap
ChIP K562 ENCFF139ZZG 358 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 336 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 73 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 113 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 238 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 217 bp overlap
BRD4 3 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 255 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 278 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 443 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 129 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 227 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 229 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 409 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 189 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 422 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 318 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 328 bp overlap
FOSL2 4 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 233 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 314 bp overlap
ChIP SK-N-SH ENCFF127ZDW 285 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 126 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 387 bp overlap
ChIP DE DE-FOXA2-2 405 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 288 bp overlap
ChIP K-562 ENCSR000EWM.GATA1.K-562 187 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 156 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 139 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000EWG.GATA2.K-562 104 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 386 bp overlap
ChIP DE DE-GATA4-2 436 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 463 bp overlap
ChIP DE DE-GATA6-2 477 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 489 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 397 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 409 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 489 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 489 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 363 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 219 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 341 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 320 bp overlap
ChIP K562 ENCFF968WBH 424 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 391 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 311 bp overlap
ChIP K562 ENCFF919OMP 404 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 373 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 147 bp overlap
ChIP K562 ENCFF317JJX 455 bp overlap
ChIP K562 ENCFF317JJX 353 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 182 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 180 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 114 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 402 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 397 bp overlap
ChIP K562 ENCFF348IBL 316 bp overlap
ChIP K562 ENCFF771OHZ 128 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 333 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 319 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 350 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 116 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 182 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 211 bp overlap
JUND 3 datasets
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 146 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 118 bp overlap
ChIP K562 ENCFF336RCR 461 bp overlap
KDM1A 3 datasets
ChIP K-562 GSE117944.KDM1A.K-562 182 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 229 bp overlap
ChIP K562 ENCFF133OLU 416 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 206 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 229 bp overlap
MAX 3 datasets
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 123 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 131 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 182 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF333ZIV 371 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 182 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 123 bp overlap
MEF2A 4 datasets
ChIP K-562 ENCSR000BNV.MEF2A.K-562 134 bp overlap
ChIP K562 ENCFF903PRO 211 bp overlap
ChIP SK-N-SH ENCFF053MLP 351 bp overlap
ChIP SK-N-SH ENCSR000BVC.MEF2A.SK-N-SH 253 bp overlap
MEF2D 2 datasets
ChIP K-562 ENCSR647ZXA.MEF2D.K-562 290 bp overlap
ChIP K562 ENCFF392LDT 421 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR675LRO.MLLT1.K-562 328 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 220 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 257 bp overlap
ChIP K562 ENCFF441KCP 356 bp overlap
MTA3 3 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 316 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 273 bp overlap
ChIP K562 ENCFF289UFB 413 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 343 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 129 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 489 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 313 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
NBN 2 datasets
ChIP K-562 ENCSR085QEV.NBN.K-562 266 bp overlap
ChIP K562 ENCFF146YTY 388 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR931HNY.NCOA1.K-562 298 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 173 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 199 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 392 bp overlap
NFIA 3 datasets
ChIP Hep-G2 GSE97661.NFIA.Hep-G2 266 bp overlap
ChIP HepG2 ENCFF815HWK 218 bp overlap
ChIP K-562 GSE97661.NFIA.K-562 417 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 226 bp overlap
NFIC 7 datasets
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 467 bp overlap
ChIP Ishikawa ENCFF029AAD 369 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 254 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 489 bp overlap
ChIP K562 ENCFF167YID 484 bp overlap
ChIP SK-N-SH ENCFF965AKM 195 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 241 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 489 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 214 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 364 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 218 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 159 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 251 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 489 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 248 bp overlap
POLR2A 6 datasets
ChIP HCT116 ENCFF508RDJ 444 bp overlap
ChIP Peyer's patch ENCFF767HVN 410 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 468 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 341 bp overlap
ChIP transverse colon ENCFF193UMS 452 bp overlap
ChIP transverse colon ENCFF610RWV 393 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 438 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 265 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 369 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 264 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 329 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 140 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 477 bp overlap
ChIP K562 ENCFF653BQJ 393 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 489 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 475 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 362 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 326 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 270 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 318 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 313 bp overlap
SMAD3 2 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 298 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 284 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 283 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 215 bp overlap
SMARCA4 8 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 481 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 255 bp overlap
ChIP K562 ENCFF506JCB 427 bp overlap
ChIP K562 ENCFF506JCB 366 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 300 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 294 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 326 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 425 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 267 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 436 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 392 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 365 bp overlap
ChIP K562 ENCFF690CFF 442 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 320 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 225 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 264 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 191 bp overlap
ChIP HCT116 ENCFF800LBN 430 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 347 bp overlap
TBP 1 dataset
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 306 bp overlap
TCF12 2 datasets
ChIP K562 ENCFF909RDY 354 bp overlap
ChIP SK-N-SH ENCFF147AHB 374 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 291 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 266 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 351 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 140 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 114 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 246 bp overlap
XRCC5 1 dataset
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 182 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 117 bp overlap
YY1 4 datasets
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 173 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 355 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 109 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 117 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 244 bp overlap
ZEB2 3 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 456 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 364 bp overlap
ChIP K562 ENCFF795CMH 408 bp overlap
ZFP36 1 dataset
ChIP HeLa-S3 ENCSR184MFH.ZFP36.HeLa-S3 96 bp overlap
ZKSCAN5 2 datasets
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 128 bp overlap
ChIP HepG2 ENCFF579HCQ 350 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 153 bp overlap
ZNF24 4 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 288 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 322 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 304 bp overlap
ChIP K562 ENCFF877JCX 470 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 226 bp overlap
ChIP HepG2 ENCFF018ISP 489 bp overlap
ZXDC 1 dataset
ChIP HepG2 ENCFF164JES 195 bp overlap