chr2 : 42,030,111 42,030,531
420 bp 92 TFs 1 linked gene
This 420 bp open chromatin element is linked to ENSG00000226398 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000226398 4.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:42,025,111 – 42,035,531
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 230 bp overlap
ChIP H1 ENCFF399KAM 222 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 420 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 296 bp overlap
ATF6 1 dataset
ChIP WTC11 ENCFF844DBH 284 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 182 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 240 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 214 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 356 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 227 bp overlap
BRD4 6 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 338 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 337 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 316 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 420 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 264 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 264 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 200 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 147 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 420 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 220 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 420 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 401 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 205 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 118 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF140EYR 89 bp overlap
ChIP BLaER1 ENCFF274GAT 256 bp overlap
ChIP BLaER1 ENCFF364PUR 63 bp overlap
ChIP BLaER1 ENCFF508JZF 81 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 183 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 335 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 263 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 233 bp overlap
ESR1 8 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 376 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 330 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 420 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 207 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 342 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 333 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 376 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 167 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 369 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 244 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 216 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 287 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 180 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 351 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 420 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 323 bp overlap
HDAC2 6 datasets
ChIP H1 ENCFF353UJQ 296 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 350 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 326 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 393 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 160 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 271 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 250 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 364 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 190 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 420 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 119 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 141 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 127 bp overlap
ChIP H1 ENCFF696SGD 284 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 248 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 420 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 219 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 214 bp overlap
ChIP WTC11 ENCFF223QFY 419 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 331 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 420 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 169 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 420 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 289 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 299 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 335 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 183 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 420 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 340 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 121 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 283 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 258 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 274 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 60 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 237 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 257 bp overlap
PAX3-FOXO1 3 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 404 bp overlap
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 247 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 317 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 163 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 226 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 420 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 380 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 360 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 420 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 380 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 304 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 295 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 420 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 323 bp overlap
RARA 3 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 420 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 351 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 258 bp overlap
RB1 1 dataset
ChIP MCF-7_siGFP GSE98728.RB1.MCF-7_siGFP 98 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 420 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 339 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 402 bp overlap
ChIP H1 ENCFF905HFL 175 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 420 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 207 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 254 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 199 bp overlap
RXRA 1 dataset
ChIP H1 ENCFF570NHK 185 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 325 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 420 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 352 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 277 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 234 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 288 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 275 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 231 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 228 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 145 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 267 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 154 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 356 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 295 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 348 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 420 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 312 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 336 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 294 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 209 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 163 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 215 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 307 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 268 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 155 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 136 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 63 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 238 bp overlap
SP4 2 datasets
ChIP WA01 ENCSR000BQV.SP4.WA01 191 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 105 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 247 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 262 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 149 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 233 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 403 bp overlap
TEAD1 4 datasets
ChIP H69 GSE62274.TEAD1.H69 237 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 310 bp overlap
ChIP WTC11 ENCFF502QUV 352 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 152 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 417 bp overlap
ChIP H1 ENCFF778PAX 182 bp overlap
ChIP Ishikawa ENCFF772OTG 295 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 174 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 300 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 420 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 420 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 184 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 362 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 167 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 151 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 322 bp overlap
ChIP WTC11 ENCFF699QGS 295 bp overlap
USF2 3 datasets
ChIP H1 ENCFF434EDF 219 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 200 bp overlap
ChIP WTC11 ENCFF139JAW 274 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 308 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 345 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 290 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 239 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 305 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF778 1 dataset
ChIP HEK293T GSE78099.ZNF778.HEK293T 112 bp overlap