chr1 : 3,063,543 3,063,992
449 bp 107 TFs 1 linked gene
This 449 bp open chromatin element is linked to PRDM16-DT and is bound by 107 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDM16-DT at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:3,058,543 – 3,068,992
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 449 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 449 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF773YDL 449 bp overlap
AKAP8 1 dataset
ChIP HepG2 ENCFF478OVI 324 bp overlap
AR 4 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 278 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.AR.LNCaP_FENG_shFOXA1_Ethanol 186 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 101 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 365 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 266 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 216 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 95 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 179 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 285 bp overlap
BRD4 6 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 253 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 449 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 149 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 449 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 379 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 354 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 244 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 449 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 79 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 400 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap
CHD4 1 dataset
ChIP HepG2 ENCFF615GUT 274 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 200 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 200 bp overlap
CTCF 4 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 159 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 213 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 160 bp overlap
ChIP testis ENCFF128XQJ 271 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 358 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DNMT3B 1 dataset
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 192 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 142 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 449 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 449 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 154 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 394 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 235 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 153 bp overlap
EZH2 40 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 282 bp overlap
ChIP A673 ENCFF790MVL 449 bp overlap
ChIP A673 ENCFF790MVL 210 bp overlap
ChIP A673 ENCFF955JRZ 449 bp overlap
ChIP GM23248 ENCFF404ZHM 355 bp overlap
ChIP GM23248 ENCFF404ZHM 93 bp overlap
ChIP GM23338 ENCFF613YON 191 bp overlap
ChIP GM23338 ENCFF886DXX 194 bp overlap
ChIP H1 ENCFF232NZA 449 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 419 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 449 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 418 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 56 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 312 bp overlap
ChIP HepG2 ENCFF912EIW 449 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 288 bp overlap
ChIP SK-N-MC ENCFF434OHW 449 bp overlap
ChIP SK-N-MC ENCFF674XUJ 449 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 449 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 449 bp overlap
ChIP astrocyte ENCFF365JTP 449 bp overlap
ChIP astrocyte ENCFF365JTP 319 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 449 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 442 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 112 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 198 bp overlap
ChIP hESC GSE113817.EZH2.hESC 294 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 306 bp overlap
ChIP hepatocyte ENCFF118DKH 127 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 96 bp overlap
ChIP hepatocyte ENCFF552DZB 449 bp overlap
ChIP hepatocyte ENCFF552DZB 449 bp overlap
ChIP keratinocyte ENCFF070STK 449 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 449 bp overlap
ChIP neural progenitor cell ENCFF018MKA 449 bp overlap
ChIP neural progenitor cell ENCFF472NFV 449 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 441 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 423 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 413 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 341 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 271 bp overlap
GLIS3 2 datasets
ChIP H9_plus GSE109562.GLIS3.H9_plus 135 bp overlap
ChIP H9_plus GSE109562.GLIS3.H9_plus 143 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 267 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 242 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 69 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 293 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 103 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 176 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 449 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 228 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 449 bp overlap
HNRNPC 1 dataset
ChIP Hep-G2 GSE120104.HNRNPC.Hep-G2 258 bp overlap
HNRNPLL 4 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 449 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 449 bp overlap
ChIP HepG2 ENCFF355PIC 397 bp overlap
ChIP HepG2 ENCFF952XAB 397 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 292 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 449 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 449 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 188 bp overlap
KDM1A 4 datasets
ChIP HepG2 ENCFF240UWG 61 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 259 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 73 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 79 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 299 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 449 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 318 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 296 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 449 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 101 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 224 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 196 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 449 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 272 bp overlap
ChIP HepG2 ENCFF038CCB 449 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 246 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 188 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 421 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 359 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 307 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 418 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 449 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 215 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 351 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 263 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 224 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 146 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 146 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 181 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 193 bp overlap
PCGF2 3 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 318 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 449 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 234 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 234 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 140 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 136 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 449 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 449 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 449 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 449 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 247 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 449 bp overlap
RBPJ 1 dataset
ChIP MDA-MB-157_GSI GSE116868.RBPJ.MDA-MB-157_GSI 160 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 59 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 83 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 326 bp overlap
ChIP Hep-G2 ENCSR523XCR.RNF2.Hep-G2 439 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 371 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 449 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 449 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 406 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 177 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 449 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 449 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 336 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 249 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 449 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 449 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 370 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 149 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 319 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 321 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 276 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 449 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 449 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 338 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 206 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 371 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 127 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 449 bp overlap
SUZ12 5 datasets
ChIP H1 ENCFF881NFR 449 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 449 bp overlap
ChIP NT2/D1 ENCFF574SXS 220 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 449 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 179 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 195 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 189 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 358 bp overlap
TBX2 1 dataset
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 229 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 288 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 235 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 436 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 257 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 449 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 296 bp overlap
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 413 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 215 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 207 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 120 bp overlap
ZMYM3 2 datasets
ChIP HepG2 ENCFF408KTI 105 bp overlap
ChIP HepG2 ENCFF667RVD 72 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 449 bp overlap
ZSCAN29 3 datasets
ChIP HepG2 ENCFF212SBM 315 bp overlap
ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 363 bp overlap
ChIP K-562 ENCSR635EXI.ZSCAN29.K-562 323 bp overlap