chr19 : 38,953,724 38,954,237
513 bp 146 TFs 1 linked gene
This 513 bp open chromatin element is linked to ENSG00000269547 and is bound by 146 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000269547 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:38,948,724 – 38,959,237
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
146 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
Atoh1 1 dataset
Motif DE_24h DE_24h-Atoh1_MA0461.3 8 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 393 bp overlap
BRD2 2 datasets
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 150 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 151 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 173 bp overlap
Crx 1 dataset
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_24h DE_24h-Dmbx1_MA0883.2 10 bp overlap
E2F6 2 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 187 bp overlap
E2F8 1 dataset
Motif DE_24h DE_24h-E2F8_MA0865.3 9 bp overlap
EGR1 1 dataset
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 424 bp overlap
ELF1 2 datasets
ChIP A-549 GSE122203.ELF1.A-549 131 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 136 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 394 bp overlap
ESRRB 1 dataset
Motif DE_24h DE_24h-ESRRB_MA0141.4 10 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 322 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 486 bp overlap
GABPA 1 dataset
ChIP A-549 ENCSR000BPY.GABPA.A-549 148 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 308 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 513 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 430 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 484 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 468 bp overlap
GSC 1 dataset
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 327 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCFF252CFL 355 bp overlap
HINFP 1 dataset
Motif DE_24h DE_24h-HINFP_MA0131.3 8 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF032DND 118 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 297 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 424 bp overlap
IKZF2 2 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 170 bp overlap
IRF7 1 dataset
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 6 datasets
ChIP A549 ENCFF728PWF 231 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 385 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 360 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 360 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 205 bp overlap
KLF1 2 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 207 bp overlap
KLF12 1 dataset
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF15 1 dataset
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
MAZ 1 dataset
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 266 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 120 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 126 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 116 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NONO 2 datasets
ChIP HepG2 ENCFF361UQH 513 bp overlap
ChIP HepG2 ENCFF361UQH 370 bp overlap
NR1I3 1 dataset
Motif DE_24h DE_24h-NR1I3_MA1534.2 8 bp overlap
NR4A1 1 dataset
Motif DE_24h DE_24h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_24h DE_24h-NR4A2_MA0160.3 8 bp overlap
NR5A1 1 dataset
Motif DE_24h DE_24h-NR5A1_MA1540.3 12 bp overlap
NR6A1 2 datasets
Motif DE_24h DE_24h-NR6A1_MA1541.2 14 bp overlap
Motif DE_24h DE_24h-NR6A1_MA1541.2 14 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
OTX1 1 dataset
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
PATZ1 3 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCFF016MNJ 406 bp overlap
ChIP HEK293 ENCFF016MNJ 428 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PITX1 1 dataset
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 275 bp overlap
ChIP HepG2 ENCFF508UTS 275 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 410 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 341 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 375 bp overlap
PRDM9 4 datasets
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Prdm5 1 dataset
Motif DE_24h DE_24h-Prdm5_MA1999.2 11 bp overlap
RARA::RXRA 2 datasets
Motif DE_24h DE_24h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_24h DE_24h-RARARXRA_MA0159.1 17 bp overlap
RBM39 1 dataset
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 186 bp overlap
REST 2 datasets
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 167 bp overlap
ChIP Panc1 ENCFF629OJO 285 bp overlap
RFX4 1 dataset
Motif DE_24h DE_24h-RFX4_MA0799.3 13 bp overlap
RHOXF1 1 dataset
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
RXRA 1 dataset
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 135 bp overlap
Rarb 1 dataset
Motif DE_24h DE_24h-Rarb_MA0858.1 17 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR000BRM.SIN3A.A-549 297 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 327 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 513 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 448 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 394 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 513 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 441 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 499 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 513 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 236 bp overlap
Motif DE_24h DE_24h-SMAD3_MA0795.1 10 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 336 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 281 bp overlap
SP1 1 dataset
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
SUPT5H 1 dataset
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 121 bp overlap
Smad4 1 dataset
Motif DE_24h DE_24h-Smad4_MA1153.2 7 bp overlap
Spz1 1 dataset
Motif DE_24h DE_24h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 359 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 297 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TFAP2A 1 dataset
Motif DE_24h DE_24h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_24h DE_24h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif DE_24h DE_24h-TFAP2E_MA1569.2 9 bp overlap
TFDP1 1 dataset
Motif DE_24h DE_24h-TFDP1_MA1122.2 8 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
USF1 1 dataset
Motif DE_24h DE_24h-USF1_MA0093.4 10 bp overlap
VEZF1 1 dataset
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 489 bp overlap
ZFP14 2 datasets
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 165 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 169 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 130 bp overlap
ZNF148 2 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 406 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 314 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 275 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF223 1 dataset
ChIP HEK293 ENCFF408UAU 371 bp overlap
ZNF248 1 dataset
ChIP HEK293 ENCFF617BFH 351 bp overlap
ZNF257 2 datasets
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF430 1 dataset
ChIP HepG2 ENCFF967HQR 386 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF701 1 dataset
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF784 1 dataset
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap