chr16 : 56,930,777 56,931,021
244 bp 101 TFs 1 linked gene
This 244 bp open chromatin element is linked to HERPUD1 and is bound by 101 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HERPUD1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:56,925,777 – 56,936,021
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 149 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 172 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 126 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 155 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 69 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 218 bp overlap
BCL6B 1 dataset
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 178 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 112 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 74 bp overlap
BRD3 2 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 122 bp overlap
ChIP MM1-S GSE43743.BRD3.MM1-S 199 bp overlap
BRD4 8 datasets
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 146 bp overlap
ChIP COLO-320 GSE73319.BRD4.COLO-320 244 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 66 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 193 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 161 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 201 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 227 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 189 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 137 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 113 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 244 bp overlap
CTCF 1 dataset
ChIP GP5D GSE51234.CTCF.GP5D 242 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 187 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 80 bp overlap
EP300 1 dataset
ChIP neural cell ENCFF442QNK 113 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 71 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 244 bp overlap
ChIP DE DE-FOXA2-2 244 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 100 bp overlap
FOXP1 1 dataset
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 244 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 244 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 244 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 244 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 244 bp overlap
GLIS2 2 datasets
ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 124 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 201 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 244 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 244 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 238 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 198 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 124 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 244 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 132 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 165 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 244 bp overlap
LARP7 2 datasets
ChIP GM12878 ENCFF513CEX 224 bp overlap
ChIP GM12878 ENCFF513CEX 244 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 162 bp overlap
MED1 4 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 98 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 196 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 244 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 244 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 130 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 182 bp overlap
ChIP HepG2 ENCFF038CCB 200 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 244 bp overlap
MTERF4 1 dataset
ChIP HepG2 ENCFF831NAM 187 bp overlap
MYC 1 dataset
ChIP NCI-H128 GSE41105.MYC.NCI-H128 119 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 244 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 119 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 79 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 127 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 212 bp overlap
NFE2L1 1 dataset
ChIP HepG2 ENCFF220RKA 244 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 56 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF902UIK 244 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 184 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 93 bp overlap
ChIP K562 ENCFF286KMN 108 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 73 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 140 bp overlap
POLR2A 6 datasets
ChIP body of pancreas ENCFF501FEC 244 bp overlap
ChIP body of pancreas ENCFF675RCN 244 bp overlap
ChIP body of pancreas ENCFF727UBE 244 bp overlap
ChIP neural cell ENCFF604SPB 99 bp overlap
ChIP neural cell ENCFF604SPB 244 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 71 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 197 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 143 bp overlap
RELA 1 dataset
ChIP GM12878 ENCSR664POU.RELA.GM12878 234 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 204 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF316DFN 244 bp overlap
SMARCA4 5 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 244 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 244 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 244 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 244 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 227 bp overlap
SMARCA5 3 datasets
ChIP GM12878 ENCFF327LDR 244 bp overlap
ChIP GM12878 ENCFF327LDR 204 bp overlap
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 244 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 244 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 136 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 244 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 244 bp overlap
SP1 1 dataset
ChIP GM12878 ENCSR000BHK.SP1.GM12878 156 bp overlap
SUPT5H 1 dataset
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 81 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 244 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 195 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 149 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 187 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCFF658WIO 179 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 109 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF962NQH 244 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCFF893BGV 67 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 134 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 134 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 59 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 193 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 221 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 244 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF185FKB 244 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 244 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 59 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 129 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 133 bp overlap
ZNF318 1 dataset
ChIP HepG2 ENCFF054INI 244 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 244 bp overlap
ZNF33B 2 datasets
ChIP HepG2 ENCFF921KSE 244 bp overlap
ChIP HepG2 ENCFF921KSE 244 bp overlap
ZNF34 1 dataset
ChIP HepG2 ENCFF739BBD 244 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 73 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 97 bp overlap
ZNF609 1 dataset
ChIP K562 ENCFF878VFO 244 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 244 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 244 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 239 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 176 bp overlap