chr1 : 232,623,053 232,623,371
318 bp 100 TFs 1 linked gene
This 318 bp open chromatin element is linked to SIPA1L2 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SIPA1L2 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:232,618,053 – 232,628,371
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AR 9 datasets
ChIP LNCaP ERP003503.AR.LNCaP 128 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 91 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 50 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 56 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 259 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 54 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 69 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 203 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 108 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 272 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 157 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 167 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 216 bp overlap
BRD4 2 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 234 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 56 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 88 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 79 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 159 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 294 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 147 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 137 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 130 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 133 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 127 bp overlap
ESR1 3 datasets
ChIP MCF-7_H3B-6545 GSE115607.ESR1.MCF-7_H3B-6545 196 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 51 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 197 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 144 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 69 bp overlap
ChIP HEK293 ENCFF528YED 268 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 98 bp overlap
FOXA1 11 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 80 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 55 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 196 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 120 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 130 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 60 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 194 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 219 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 123 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 54 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 58 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 70 bp overlap
GATA6 6 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 70 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 254 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 100 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 92 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 185 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 202 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 197 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 206 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 189 bp overlap
HOXB8 2 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 97 bp overlap
ChIP PANC-1 GSE119930.HOXB8.PANC-1 53 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 56 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 263 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 221 bp overlap
JUND 2 datasets
ChIP GP5D GSE51234.JUND.GP5D 124 bp overlap
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 197 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCFF326EGX 64 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 142 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 112 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 307 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 180 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 173 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 55 bp overlap
MED1 6 datasets
ChIP G296S GSE85628.MED1.G296S 269 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 269 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 291 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 208 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 255 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 112 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 123 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 64 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 318 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 261 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 211 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 86 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 132 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 100 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 240 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 316 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 141 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 283 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 295 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 177 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 129 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 121 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 140 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 129 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 79 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 223 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 124 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 121 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 213 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 213 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 217 bp overlap
SOX2 4 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 80 bp overlap
ChIP LK2 GSE137459.SOX2.LK2 131 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 101 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 178 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 105 bp overlap
STAT3 7 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 63 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 76 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 75 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 225 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 157 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 156 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 140 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 226 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 170 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 128 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 240 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 240 bp overlap
TEAD1 3 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 166 bp overlap
ChIP WTC11 ENCFF502QUV 277 bp overlap
ChIP WTC11 ENCFF502QUV 232 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
ChIP H1 ENCFF778PAX 125 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 164 bp overlap
ChIP Ishikawa ENCFF772OTG 254 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 171 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 233 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 204 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 122 bp overlap
ChIP HEK293 ENCFF582MWI 318 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 318 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 120 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 318 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 245 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 265 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 307 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 135 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 236 bp overlap
ChIP HEK293 ENCFF033NQQ 200 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZMYND8 1 dataset
ChIP HEK293_Flag-ZMYND8 GSE81696.ZMYND8.HEK293_Flag-ZMYND8 185 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 301 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 194 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 318 bp overlap
ZNF24 2 datasets
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 191 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 190 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 168 bp overlap
ZSCAN5A 1 dataset
ChIP HEK293 ENCFF610EME 259 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap