chr13 : 35,857,690 – 35,858,256
566 bp 86 TFs 1 linked gene
This 566 bp open chromatin element is linked to DCLK1 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DCLK1 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:35,852,690 – 35,863,256
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 566 bp overlap
ChIP H1 ENCFF399KAM 338 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 566 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 464 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 539 bp overlap
ATF6 1 dataset
Motif ES_0h ES_0h-ATF6_MA1466.2 13 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 124 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 357 bp overlap
BRD4 1 dataset
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 349 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 196 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 241 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 328 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 401 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 504 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 199 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 217 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 178 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 113 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 160 bp overlap
CREB3 1 dataset
Motif ES_0h ES_0h-CREB3_MA0638.2 12 bp overlap
CREB3L1 1 dataset
Motif ES_0h ES_0h-CREB3L1_MA0839.2 13 bp overlap
CREB3L4 1 dataset
Motif ES_0h ES_0h-CREB3L4_MA1474.2 10 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 473 bp overlap
Creb3l2 1 dataset
Motif ES_0h ES_0h-Creb3l2_MA0608.1 9 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 250 bp overlap
ChIP hESC GSE17917.EP300.hESC 370 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 197 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 2 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 418 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 249 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 261 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 301 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 330 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 313 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 532 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 223 bp overlap
JUN 7 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 468 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 335 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 313 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 478 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 472 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 492 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 466 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 130 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAFK 2 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 130 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 264 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 323 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 108 bp overlap
MED1 5 datasets
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 566 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 311 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 562 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 566 bp overlap
MED12 2 datasets
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 61 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 243 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Mafb 1 dataset
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 260 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 566 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 251 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 140 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 565 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 433 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 378 bp overlap
ChIP hESC GSE18292.NANOG.hESC 203 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 183 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 253 bp overlap
NR1D1 1 dataset
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 311 bp overlap
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 374 bp overlap
NR6A1 1 dataset
Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap
NRL 1 dataset
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
POLR2A 5 datasets
ChIP H1 ENCFF566JSR 166 bp overlap
ChIP H1 ENCFF566JSR 496 bp overlap
ChIP H1 ENCFF770YBQ 379 bp overlap
ChIP H1 ENCFF833NJP 335 bp overlap
ChIP spleen ENCFF044PYR 128 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 7 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 119 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 566 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 141 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 493 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 534 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 327 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 255 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 224 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 524 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 217 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 115 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 151 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 246 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 276 bp overlap
SMARCA4 10 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 509 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 232 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 187 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 499 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 406 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 381 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 491 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 330 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 514 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 397 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 552 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 375 bp overlap
SMARCC1 6 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 302 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 192 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 285 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 510 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 357 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 372 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 204 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 353 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 485 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 433 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 213 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 291 bp overlap
ChIP hESC GSE122298.TBP.hESC 240 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 187 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 349 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 191 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap
TEAD1 5 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP H69 GSE62274.TEAD1.H69 162 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 225 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 9 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 240 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 487 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 223 bp overlap
ChIP SK-N-SH ENCFF754TJT 401 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 307 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 417 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 208 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 416 bp overlap
XBP1 1 dataset
Motif ES_0h ES_0h-XBP1_MA0844.2 11 bp overlap
YAP1 2 datasets
ChIP MCF-10A GSE97972.YAP1.MCF-10A 156 bp overlap
ChIP hiPSC GSE111930.YAP1.hiPSC 178 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 475 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF101 1 dataset
ChIP HEK293T GSE78099.ZNF101.HEK293T 263 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 421 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 288 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 247 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 545 bp overlap
ZNF524 2 datasets
Motif ES_0h ES_0h-ZNF524_MA2096.1 9 bp overlap
Motif ES_0h ES_0h-ZNF524_MA2096.1 9 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
Huangfu Lab · Publications · Resources · Contact