chr12 : 42,485,748 – 42,486,391
643 bp 112 TFs 1 linked gene
This 643 bp open chromatin element is linked to PRICKLE1 and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRICKLE1 2.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:42,480,748 – 42,491,391
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 643 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 332 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 522 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 479 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 270 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 368 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 125 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 148 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 484 bp overlap
ChIP H1 ENCFF126NLU 552 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 451 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 243 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 138 bp overlap
DPF2 1 dataset
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 424 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP Ishikawa ENCFF364ZWT 315 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 228 bp overlap
ChIP hESC GSE17917.EP300.hESC 368 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 154 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 215 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 214 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 266 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 157 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 216 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 375 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 269 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 442 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 404 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 398 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 437 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 304 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 67 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 207 bp overlap
MED1 3 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 643 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 333 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 253 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 384 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 567 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 243 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 540 bp overlap
ChIP hESC GSE20650.NANOG.hESC 412 bp overlap
ChIP hESC GSE18292.NANOG.hESC 204 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 374 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 332 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 295 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 347 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 234 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 401 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 162 bp overlap
ChIP H1 ENCFF566JSR 548 bp overlap
ChIP H1 ENCFF566JSR 524 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU5F1 13 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 288 bp overlap
ChIP GM23338 ENCFF333SNB 126 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 549 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 643 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 192 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 307 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 446 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 286 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 318 bp overlap
ChIP hESC GSE20650.POU5F1.hESC 177 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 641 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 335 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 399 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 506 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RNF2 3 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 73 bp overlap
ChIP A-549 ENCSR798EGJ.RNF2.A-549 209 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 416 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 151 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 153 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 416 bp overlap
SETDB1 1 dataset
ChIP HEK293 ENCFF676PLV 220 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 500 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 138 bp overlap
SMAD2 3 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 371 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 307 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 429 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 539 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 358 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 257 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 242 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 256 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 209 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 77 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 309 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 490 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 643 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 482 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 375 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 521 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 494 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 227 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 448 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 556 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP hESC GSE69479.SOX2.hESC 231 bp overlap
ChIP hESC GSE18292.SOX2.hESC 213 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 375 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 328 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 184 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 325 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 230 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 386 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 269 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP H1 ENCFF859IIO 368 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 203 bp overlap
ChIP hESC GSE122298.TBP.hESC 216 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 182 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif ES_0h ES_0h-TBX21_MA0690.3 10 bp overlap
TBX4 2 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif ES_0h ES_0h-TBX4_MA0806.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 258 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 355 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 409 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 134 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 209 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 528 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF24 3 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 359 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 55 bp overlap
ChIP K562 ENCFF615YYW 82 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 329 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 187 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
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