chr11 : 123,168,860 123,170,139
1,279 bp 127 TFs 5 linked genes
This 1.3 kb open chromatin element is linked to 5 target genes and is bound by 127 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
CLMP 25.3 kb Distal Multiome
ENSG00000288061 107.4 kb Distal Multiome
HSPA8 107.8 kb Distal Multiome
JHY 287.2 kb Distal Multiome
GRAMD1B 339.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:123,163,860 – 123,175,139
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
BRD2 1 dataset
ChIP K-562_IBET151_500nM GSE120715.BRD2.K-562_IBET151_500nM 160 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 490 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 362 bp overlap
CTCF 15 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 348 bp overlap
ChIP A673 ENCFF123WOM 203 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 179 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 187 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 278 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 288 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 180 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 212 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 177 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 325 bp overlap
ChIP osteoblast ENCFF491ZJZ 425 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 232 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 378 bp overlap
EBF1 3 datasets
Motif DE_24h DE_24h-EBF1_MA0154.5 11 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 221 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 235 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 171 bp overlap
ChIP hESC GSE26097.EOMES.hESC 175 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 136 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
Ebf4 1 dataset
Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 390 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 349 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 333 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 388 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 411 bp overlap
ChIP DE DE-FOXA2-2 334 bp overlap
FOXB1 2 datasets
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXD3 2 datasets
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
Motif DE_24h DE_24h-FOXD3_MA0041.3 14 bp overlap
FOXF2 2 datasets
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
Motif DE_24h DE_24h-FOXF2_MA0030.2 9 bp overlap
FOXH1 2 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 391 bp overlap
ChIP DE DE-GATA4-2 469 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 407 bp overlap
ChIP DE DE-GATA6-2 482 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 473 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 525 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 636 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 504 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 403 bp overlap
ChIP foregut GSE117136.GATA6.foregut 261 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 116 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hmga1 2 datasets
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Motif DE_24h DE_24h-Hmga1_MA2124.1 8 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 413 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 406 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 480 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
MEF2A 2 datasets
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
Motif DE_24h DE_24h-MEF2A_MA0052.5 10 bp overlap
MEF2C 2 datasets
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
Motif DE_24h DE_24h-MEF2C_MA0497.2 11 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 496 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 203 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 208 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 184 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 269 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 248 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 219 bp overlap
NFKB1 3 datasets
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
Motif DE_24h DE_24h-NFKB1_MA0105.4 13 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 167 bp overlap
NFKB2 2 datasets
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
Motif DE_24h DE_24h-NFKB2_MA0778.2 11 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
NR1I3 2 datasets
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
Motif DE_24h DE_24h-NR1I3_MA1534.2 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 373 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP vagina ENCFF384GAB 107 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 564 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 664 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.RAD21.THP-1_PMA_Dex-0h 209 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.RAD21.THP-1_PMA_Dex-6h 161 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
RELA 3 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
RELB 2 datasets
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
Motif DE_24h DE_24h-RELB_MA1117.2 7 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 231 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 553 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 464 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 572 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 557 bp overlap
SMAD2_3 8 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 585 bp overlap
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 401 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 691 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 468 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 1261 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 458 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1057 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 177 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 276 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 231 bp overlap
SMARCA4 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 254 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 457 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 534 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 340 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 188 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 207 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 311 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 166 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 353 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT3 1 dataset
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 106 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat5b 1 dataset
Motif DE_24h DE_24h-Stat5b_MA1625.2 9 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 190 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 265 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_24h DE_24h-TFAP4ETV1_MA1966.2 13 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tfcp2l1 2 datasets
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 156 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_24h DE_24h-ZNF418_MA1980.1 15 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF680 2 datasets
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 253 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 181 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap