chr9:137,851,599–137,852,229

chr9 : 137,851,599 – 137,852,229

630 bp 104 TFs 6 linked genes

This 630 bp open chromatin element is linked to 6 target genes and is bound by 104 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
CACNA1B		25.9 kb	Distal	Multiome
EHMT1		232.9 kb	Distal	Multiome
ARRDC1		246.2 kb	Distal	Multiome
ZMYND19		261.4 kb	Distal	Multiome
DPH7		273.0 kb	Distal	Multiome
MRPL41		300.0 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

104 transcription factors

ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 322 bp overlap

ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 136 bp overlap

ARID1B 1 dataset

ChIP K-562 ENCSR822CCM.ARID1B.K-562 203 bp overlap

ChIP K-562 ENCSR972ZBV.ATF7.K-562 266 bp overlap

BHLHE22 1 dataset

Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap

CBFA2T3 1 dataset

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 230 bp overlap

CEBPA 5 datasets

ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 211 bp overlap

ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 200 bp overlap

ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 182 bp overlap

ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 187 bp overlap

ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 52 bp overlap

CEBPB 5 datasets

ChIP HeLa-S3 ENCFF722WEG 183 bp overlap

ChIP HeLa-S3 ENCFF722WEG 286 bp overlap

ChIP K-562 ENCSR000EHE.CEBPB.K-562 278 bp overlap

ChIP K-562 ENCSR000BRQ.CEBPB.K-562 222 bp overlap

ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 267 bp overlap

CEBPG 1 dataset

ChIP K-562 ENCSR490LWA.CEBPG.K-562 466 bp overlap

CTBP2 1 dataset

ChIP MCF-7 GSE107013.CTBP2.MCF-7 202 bp overlap

ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 165 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF680YXW 261 bp overlap

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

ChIP HeLa-S3 ENCFF948XBE 266 bp overlap

ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 102 bp overlap

ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 209 bp overlap

EBF3_P177L 1 dataset

ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 261 bp overlap

ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 200 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 583 bp overlap

EP300 8 datasets

ChIP HeLa-S3 ENCFF089VPQ 222 bp overlap

ChIP HeLa-S3 ENCFF245KNK 243 bp overlap

ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 205 bp overlap

ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 156 bp overlap

ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 225 bp overlap

ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 216 bp overlap

ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 134 bp overlap

ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 249 bp overlap

ChIP PC-9 ENCSR793USK.EZH2.PC-9 281 bp overlap

FOXA2 3 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 372 bp overlap

ChIP DE DE-FOXA2-1 617 bp overlap

ChIP DE DE-FOXA2-2 482 bp overlap

FOXH1 1 dataset

Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap

GATA1 3 datasets

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 93 bp overlap

ChIP K-562 GSE107726.GATA1.K-562 329 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 277 bp overlap

GATA1::TAL1 1 dataset

Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 22 datasets

ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 442 bp overlap

ChIP ESF GSE108408.GATA2.ESF 561 bp overlap

ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 214 bp overlap

ChIP LNCaP GSE38391.GATA2.LNCaP 208 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 208 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 521 bp overlap

ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 264 bp overlap

ChIP SH-SY5Y ENCFF485YIB 164 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 630 bp overlap

ChIP SK-N-SH ENCFF764OZD 417 bp overlap

ChIP SK-N-SH ENCFF764OZD 263 bp overlap

ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 630 bp overlap

ChIP SKH1 GSE87283.GATA2.SKH1 235 bp overlap

ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 459 bp overlap

ChIP VCaP GSE125236.GATA2.VCaP 293 bp overlap

ChIP WA09 GSE105081.GATA2.WA09 150 bp overlap

ChIP WA09 GSE105081.GATA2.WA09 280 bp overlap

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 620 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 331 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 316 bp overlap

ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 345 bp overlap

ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 421 bp overlap

GATA3 21 datasets

ChIP BE2C GSE65664.GATA3.BE2C 257 bp overlap

ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 495 bp overlap

ChIP Kelly GSE65664.GATA3.Kelly 547 bp overlap

ChIP MCF-7 ENCFF352QVM 202 bp overlap

ChIP MCF-7 ENCFF437NQS 371 bp overlap

ChIP MCF-7 GSE51274.GATA3.MCF-7 346 bp overlap

ChIP MCF-7 GSE133072.GATA3.MCF-7 309 bp overlap

ChIP MCF-7 GSE122847.GATA3.MCF-7 302 bp overlap

ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 238 bp overlap

ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 443 bp overlap

ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 294 bp overlap

ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 296 bp overlap

ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 78 bp overlap

ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 240 bp overlap

ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 298 bp overlap

ChIP SH-SY5Y ENCFF475HYF 462 bp overlap

ChIP SH-SY5Y ENCFF475HYF 254 bp overlap

ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 619 bp overlap

ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 205 bp overlap

ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 148 bp overlap

ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 179 bp overlap

GATA3_Nter 1 dataset

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 384 bp overlap

GATA4 4 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 425 bp overlap

ChIP DE DE-GATA4-1 630 bp overlap

ChIP DE DE-GATA4-2 630 bp overlap

ChIP Hep-G2 GSE135714.GATA4.Hep-G2 392 bp overlap

GATA5 1 dataset

Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap

GATA6 13 datasets

ChIP AGS GSE51705.GATA6.AGS 203 bp overlap

ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 210 bp overlap

ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 331 bp overlap

ChIP DE DE-GATA6-1 630 bp overlap

ChIP DE DE-GATA6-2 630 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 630 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 630 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 630 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 630 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 630 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 630 bp overlap

ChIP YCC-3 GSE51705.GATA6.YCC-3 274 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 630 bp overlap

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

HAND2 1 dataset

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 415 bp overlap

ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 201 bp overlap

ChIP HepG2 ENCFF854JLR 245 bp overlap

ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 197 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 274 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 455 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 551 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 452 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 266 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 630 bp overlap

JUND 2 datasets

ChIP HeLa-S3 ENCFF642OHL 247 bp overlap

ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 149 bp overlap

KDM1A 1 dataset

ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 291 bp overlap

ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 175 bp overlap

MAFF 4 datasets

Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap

Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap

ChIP HeLa-S3 ENCFF783SBT 276 bp overlap

ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 253 bp overlap

ChIP HeLa-S3 ENCFF304XGR 223 bp overlap

ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 53 bp overlap

MEIS1 2 datasets

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

MXI1 2 datasets

ChIP SK-N-SH ENCFF746HVJ 407 bp overlap

ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 123 bp overlap

ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 136 bp overlap

MYCN 2 datasets

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 243 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 273 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 163 bp overlap

Mafb 2 datasets

Motif DE_36h DE_36h-Mafb_MA0117.3 11 bp overlap

Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap

NELFE 3 datasets

ChIP HeLa GSE125534.NELFE.HeLa 119 bp overlap

ChIP HeLa GSE125534.NELFE.HeLa 222 bp overlap

ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 143 bp overlap

NR1I3 2 datasets

Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap

Motif DE_48h DE_48h-NR1I3_MA1534.2 8 bp overlap

NR6A1 2 datasets

Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap

Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap

Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap

Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap

Neurod2 1 dataset

Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 203 bp overlap

OVOL1 2 datasets

ChIP MCF-7 ENCFF537GWI 273 bp overlap

ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 237 bp overlap

Olig2 1 dataset

Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap

PITX1 1 dataset

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 555 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 342 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 383 bp overlap

PRDM1 2 datasets

ChIP HeLa-S3 ENCFF893HDJ 220 bp overlap

ChIP HeLa-S3 ENCSR000ECY.PRDM1.HeLa-S3 248 bp overlap

Ptf1A 1 dataset

Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap

RAD21 2 datasets

ChIP HeLa-S3 ENCFF775CHI 189 bp overlap

ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 257 bp overlap

RCOR1 3 datasets

ChIP HeLa-S3 ENCFF471KYI 237 bp overlap

ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 206 bp overlap

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 290 bp overlap

ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap

RHOXF1 1 dataset

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

RXRB 2 datasets

Motif DE_36h DE_36h-RXRB_MA1555.1 14 bp overlap

Motif DE_48h DE_48h-RXRB_MA1555.1 14 bp overlap

Rhox11 1 dataset

Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap

SIN3A 1 dataset

ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 161 bp overlap

ChIP HL-60_CRISPRCas9_ctrl GSE107553.SKI.HL-60_CRISPRCas9_ctrl 239 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 630 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 630 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 630 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 590 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 630 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 594 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 630 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 625 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 630 bp overlap

ChIP HeLa-S3 ENCFF992MML 186 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 573 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 504 bp overlap

ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 100 bp overlap

STAT3 2 datasets

ChIP HeLa-S3 ENCFF655DGU 242 bp overlap

ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 191 bp overlap

TAL1 3 datasets

ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 168 bp overlap

ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 192 bp overlap

ChIP ProEs GSE59087.TAL1.ProEs 127 bp overlap

ChIP Kelly GSE94822.TBX2.Kelly 153 bp overlap

ChIP SK-N-SH ENCFF270OWF 437 bp overlap

TCF7L1 2 datasets

Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap

Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 8 datasets

Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap

Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap

ChIP HeLa-S3 ENCFF084KRL 385 bp overlap

ChIP HeLa-S3 ENCFF084KRL 186 bp overlap

ChIP HeLa-S3 ENCFF673QAB 311 bp overlap

ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 630 bp overlap

ChIP HeLa-S3 ENCSR000EVF.TCF7L2.HeLa-S3 428 bp overlap

ChIP MCF-7 ENCFF219LIX 390 bp overlap

TEAD4 1 dataset

ChIP SNU-216 GSE44416.TEAD4.SNU-216 89 bp overlap

TFAP2A 2 datasets

ChIP WA09 GSE105081.TFAP2A.WA09 203 bp overlap

ChIP WA09 GSE105081.TFAP2A.WA09 238 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 185 bp overlap

TFAP4 1 dataset

Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap

ChIP SK-N-SH ENCFF415OYE 297 bp overlap

TRPS1 2 datasets

ChIP MCF-7 GSE133072.TRPS1.MCF-7 310 bp overlap

ChIP T-47D GSE107013.TRPS1.T-47D 120 bp overlap

TSHZ2 1 dataset

ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 269 bp overlap

Tcf12 1 dataset

Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap

ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 157 bp overlap

ZBTB12 1 dataset

Motif DE_36h DE_36h-ZBTB12_MA1649.2 7 bp overlap

ZBTB6 1 dataset

Motif DE_36h DE_36h-ZBTB6_MA1581.2 9 bp overlap

ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 216 bp overlap

ZNF143 1 dataset

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 178 bp overlap

ZNF317 1 dataset

Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap

ZNF354C 1 dataset

Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap

ZNF582 1 dataset

Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 255 bp overlap

ZNF85 1 dataset

Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap

Zic1::Zic2 1 dataset

Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap

Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap

Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap