chr7:129,775,743–129,776,961

chr7 : 129,775,743 – 129,776,961

1,218 bp 77 TFs 7 linked genes

This 1.2 kb open chromatin element is linked to 7 target genes and is bound by 77 transcription factors.

Linked Genes

7 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000286380		3.3 kb	Proximal	Proximity
ENSG00000290319		3.4 kb	Proximal	Proximity
NRF1		164.9 kb	Distal	Multiome
ENSG00000273329		164.9 kb	Distal	Multiome
UBE2H		176.4 kb	Distal	Multiome
ZC3HC1		274.8 kb	Distal	Multiome
KLHDC10		294.0 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

77 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 337 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 785 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 92 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 566 bp overlap

ATF2 2 datasets

ChIP H1 ENCFF295GZO 571 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 380 bp overlap

ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 120 bp overlap

BCOR 5 datasets

ChIP K-562 ENCSR808AKZ.BCOR.K-562 257 bp overlap

ChIP K562 ENCFF343XWA 437 bp overlap

ChIP WA01 GSE104690.BCOR.WA01 192 bp overlap

ChIP WA01 GSE104690.BCOR.WA01 900 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 405 bp overlap

BRD1 3 datasets

ChIP HUES-64 GSE104059.BRD1.HUES-64 101 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 261 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 102 bp overlap

BRD4 3 datasets

ChIP COLO-741 GSE73319.BRD4.COLO-741 381 bp overlap

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 210 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap

CEBPB 2 datasets

ChIP H1 ENCFF871PTR 227 bp overlap

ChIP WA01 ENCSR000EBV.CEBPB.WA01 192 bp overlap

CHD1 2 datasets

ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap

ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 53 bp overlap

CREB1 2 datasets

ChIP GM23338 ENCFF432ZEW 305 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 370 bp overlap

CTBP2 2 datasets

ChIP WA01 ENCSR000EUO.CTBP2.WA01 671 bp overlap

ChIP WA01 ENCSR000EUO.CTBP2.WA01 228 bp overlap

ChIP NTERA2 GSE58641.DDX5.NTERA2 276 bp overlap

EP300 5 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 180 bp overlap

ChIP hESC GSE17917.EP300.hESC 296 bp overlap

ChIP osteoblast ENCSR000AUD.EP300.osteoblast 110 bp overlap

ChIP osteoblast ENCSR000AUD.EP300.osteoblast 556 bp overlap

ETS1 2 datasets

ChIP GM23338 ENCFF701IZH 377 bp overlap

ChIP hESC ENCSR534VHI.ETS1.hESC 204 bp overlap

EZH2 3 datasets

ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 123 bp overlap

ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 324 bp overlap

ChIP neural progenitor cell ENCFF472NFV 412 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 205 bp overlap

GABPA 1 dataset

ChIP WA01 ENCSR000BIW.GABPA.WA01 90 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 207 bp overlap

HDAC2 6 datasets

ChIP H1 ENCFF353UJQ 645 bp overlap

ChIP H1 ENCFF353UJQ 645 bp overlap

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 185 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 434 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 346 bp overlap

HIF1A 1 dataset

ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 215 bp overlap

JARID2 3 datasets

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 244 bp overlap

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 297 bp overlap

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 180 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 478 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 487 bp overlap

KLF17 3 datasets

Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap

ChIP HEK293 ENCFF658MHR 181 bp overlap

ChIP HEK293 ENCSR065WUF.KLF17.HEK293 227 bp overlap

KLF4 2 datasets

ChIP WA09 GSE105028.KLF4.WA09 483 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 206 bp overlap

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 178 bp overlap

ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 216 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 268 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 240 bp overlap

ChIP HEK293 ENCFF994GSG 203 bp overlap

ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 198 bp overlap

ChIP HEK293 GSE76494.MAZ.HEK293 163 bp overlap

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 186 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 156 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 104 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 267 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 744 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 238 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 677 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 580 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 448 bp overlap

ChIP hESC GSE20650.NANOG.hESC 217 bp overlap

ChIP hESC GSE18292.NANOG.hESC 103 bp overlap

NIPBL 5 datasets

ChIP WA09 GSE105028.NIPBL.WA09 352 bp overlap

ChIP hESC GSE64758.NIPBL.hESC 317 bp overlap

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 198 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 204 bp overlap

ChIP hESC_activin GSE64758.NIPBL.hESC_activin 249 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 132 bp overlap

POLR2G 1 dataset

ChIP K562 ENCFF648YPL 381 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 17 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 606 bp overlap

ChIP GM23338 ENCFF333SNB 111 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 791 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 397 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 969 bp overlap

ChIP OSK GSE81899.POU5F1.OSK 211 bp overlap

ChIP OSKM GSE81899.POU5F1.OSKM 196 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 65 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 241 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 351 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 348 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 295 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 464 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 457 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 290 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 263 bp overlap

POU5F1_M 2 datasets

ChIP DE_D1 DED1-OCT4-M_Batch_II 331 bp overlap

ChIP DE_D1 DED1-OCT4-M_Batch_II 441 bp overlap

RBBP5 2 datasets

ChIP WA01 ENCSR000AQC.RBBP5.WA01 141 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 233 bp overlap

RBFOX2 1 dataset

ChIP K-562 GSE120104.RBFOX2.K-562 187 bp overlap

RNF2 4 datasets

ChIP WA01 GSE104690.RNF2.WA01 436 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 199 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 677 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 383 bp overlap

ChIP WA01 ENCSR000BJW.RXRA.WA01 133 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 329 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 343 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 144 bp overlap

SIN3A 2 datasets

ChIP WA01 ENCSR000EBO.SIN3A.WA01 320 bp overlap

ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap

SMAD2_3 1 dataset

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 362 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE21614.SMAD3.BG03 273 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 482 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 343 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 385 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 260 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 409 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 296 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 101 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 392 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 287 bp overlap

SRSF3 1 dataset

ChIP K-562 GSE120104.SRSF3.K-562 72 bp overlap

SUZ12 2 datasets

ChIP WA01 ENCSR000ATS.SUZ12.WA01 142 bp overlap

ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 128 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 240 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 257 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 90 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 110 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 127 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 208 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 143 bp overlap

ChIP NPC GSE154479.TCF3.NPC 436 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TRERF1 1 dataset

ChIP WTC11 ENCFF113BUM 245 bp overlap

TRIM28 3 datasets

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 214 bp overlap

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 140 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 179 bp overlap

ZBTB6 3 datasets

ChIP HEK293 ENCFF881ECZ 147 bp overlap

ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 192 bp overlap

ChIP HEK293 GSE76494.ZBTB6.HEK293 157 bp overlap

ZFP14 1 dataset

ChIP HEK293T GSE78099.ZFP14.HEK293T 158 bp overlap

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 109 bp overlap

ZNF114 2 datasets

ChIP GM23338 ENCFF631OSW 357 bp overlap

ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 249 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 311 bp overlap

ZNF273 1 dataset

ChIP HEK293T GSE78099.ZNF273.HEK293T 235 bp overlap

ZNF382 1 dataset

Motif DE_24h DE_24h-ZNF382_MA1594.1 24 bp overlap

ZNF396 1 dataset

ChIP WTC11 ENCFF776JWJ 301 bp overlap

ZNF418 1 dataset

Motif DE_24h DE_24h-ZNF418_MA1980.1 15 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 317 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 640 bp overlap

ZNF554 1 dataset

ChIP HEK293 GSE76494.ZNF554.HEK293 110 bp overlap

ZNF684 1 dataset

Motif DE_24h DE_24h-ZNF684_MA1600.2 14 bp overlap