chr6 : 125,002,108 125,002,410
302 bp 108 TFs 0 linked genes
This 302 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:124,997,108 – 125,007,410
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 302 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 144 bp overlap
ATF2 1 dataset
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
BACH2 1 dataset
Motif DE_60h DE_60h-BACH2_MA1470.2 19 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 103 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 182 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 224 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 302 bp overlap
BRD4 12 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 145 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 149 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 268 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 221 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 251 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 119 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 239 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 252 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 267 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 181 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 139 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 302 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 215 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 257 bp overlap
CDK9 1 dataset
ChIP A-375_DMSO GSE57431.CDK9.A-375_DMSO 158 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 173 bp overlap
CREB1 2 datasets
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 124 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 213 bp overlap
CRX 2 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 168 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 261 bp overlap
CTCF 1 dataset
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 204 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 302 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 177 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 180 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 302 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 147 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 205 bp overlap
ESR1 8 datasets
Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 137 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 227 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 227 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 129 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 147 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 162 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 118 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 197 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 295 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 123 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 302 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 249 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 220 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 118 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 91 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 116 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 82 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 114 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 126 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 69 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 93 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 144 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 107 bp overlap
FOXL2 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 229 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 123 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 53 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 90 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 251 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 264 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 293 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 302 bp overlap
ChIP DE DE-GATA6-2 302 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 193 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 229 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 246 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 106 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 131 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 302 bp overlap
ChIP K562 ENCFF771OHZ 156 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 224 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 164 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 129 bp overlap
JUN 1 dataset
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 302 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 282 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 200 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 140 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 192 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 266 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 302 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 274 bp overlap
MYC 1 dataset
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 147 bp overlap
MYCN 1 dataset
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 90 bp overlap
MYNN 1 dataset
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 75 bp overlap
MYOD1 5 datasets
ChIP RD GSE137168.MYOD1.RD 212 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 240 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 293 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 201 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 229 bp overlap
NANOG 2 datasets
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 128 bp overlap
ChIP hESC GSE18292.NANOG.hESC 112 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 253 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 251 bp overlap
PAX3-FOXO1 3 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 220 bp overlap
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 167 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 241 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 192 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 243 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF754JQR 302 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 148 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 73 bp overlap
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 285 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 302 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 170 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 302 bp overlap
RBBP5 1 dataset
ChIP K562 ENCFF070CVK 302 bp overlap
RELA 4 datasets
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 144 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX3 1 dataset
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
SETDB1 1 dataset
ChIP WN8532 GSE36579.SETDB1.WN8532 103 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 147 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 110 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 116 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 93 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 140 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 101 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 302 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 88 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 179 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 284 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 187 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 260 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 123 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 287 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 265 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
SRF 2 datasets
ChIP Ishikawa ENCFF992QXM 287 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 153 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 302 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 84 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 162 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 207 bp overlap
YAP1 1 dataset
ChIP OVCAR-5 GSE57236.YAP1.OVCAR-5 247 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 90 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 253 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 276 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 185 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 54 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 159 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 155 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 302 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 287 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 302 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 146 bp overlap
ZNF766 1 dataset
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 271 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 201 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 132 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 221 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 192 bp overlap