chr1 : 113,758,070 – 113,758,251
181 bp 89 TFs 1 linked gene
This 181 bp open chromatin element is linked to PHTF1 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PHTF1 903 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:113,753,070 – 113,763,251
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP K-562 ENCSR426URK.AFF1.K-562 103 bp overlap
ChIP K562 ENCFF096RYC 181 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 116 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 181 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 181 bp overlap
ARID4A 1 dataset
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 133 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 55 bp overlap
ATF4 1 dataset
ChIP K562 ENCFF674KTF 88 bp overlap
BRD4 8 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 181 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 138 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 181 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 181 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 70 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 181 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 127 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 113 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 181 bp overlap
CHD1 1 dataset
ChIP MCF-7 ENCFF937PTG 76 bp overlap
CTCF 1 dataset
ChIP MCF-7 ENCFF210JUZ 108 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 181 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 181 bp overlap
DEAF1 2 datasets
ChIP K562 ENCFF251RVO 181 bp overlap
ChIP K562 ENCFF251RVO 181 bp overlap
E2F1 3 datasets
ChIP MCF-7 ENCFF692OYJ 181 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 181 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 181 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 181 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 181 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FOXJ3 1 dataset
ChIP HepG2 ENCFF430OSX 121 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 171 bp overlap
GMEB1 1 dataset
ChIP HepG2 ENCFF434UDC 181 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 117 bp overlap
ChIP K562 ENCFF744ALD 81 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 65 bp overlap
HNF4G 1 dataset
ChIP liver ENCFF170YNZ 58 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 181 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF238LYK 181 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 120 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 181 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 181 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 136 bp overlap
KMT2A 5 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 181 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 132 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 146 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 123 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 181 bp overlap
KMT2B 3 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2B.HEK293T_C-term_C104 74 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2B.HEK293T_C-term_C49 116 bp overlap
ChIP HepG2 ENCFF675TEK 181 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 121 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 116 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 181 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 99 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 181 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 181 bp overlap
ChIP K562 ENCFF074XRJ 157 bp overlap
MNT 2 datasets
ChIP K-562 ENCSR390VGH.MNT.K-562 116 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 98 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 181 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 78 bp overlap
MYCN 2 datasets
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 174 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 139 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 181 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 178 bp overlap
NR1I2 2 datasets
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
Motif DE_24h DE_24h-NR1I2_MA1533.2 15 bp overlap
NRF1 2 datasets
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 181 bp overlap
ChIP K562 ENCFF791UHF 181 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 159 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 104 bp overlap
PHIP 3 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 57 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 84 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 106 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 181 bp overlap
ChIP GM23338 ENCFF450WCS 126 bp overlap
ChIP K562 ENCFF836GHX 148 bp overlap
ChIP body of pancreas ENCFF727UBE 181 bp overlap
ChIP body of pancreas ENCFF727UBE 68 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 181 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 151 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 75 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 168 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 181 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 181 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 181 bp overlap
SAP130 2 datasets
ChIP HepG2 ENCFF892EHZ 181 bp overlap
ChIP HepG2 ENCFF892EHZ 153 bp overlap
SMARCA4 7 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 93 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 181 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 181 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 181 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 181 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 181 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 52 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCFF327LDR 181 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 115 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 181 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 181 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 181 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 181 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 147 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 164 bp overlap
STAG1 1 dataset
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 92 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 123 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0815.1 13 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 181 bp overlap
TRIM28 1 dataset
ChIP K562 ENCFF429WPG 163 bp overlap
UBTF 1 dataset
ChIP K562 ENCFF174SPM 181 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 133 bp overlap
YY1 7 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 181 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 181 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 181 bp overlap
ChIP K562 ENCFF199FNC 181 bp overlap
ChIP K562 ENCFF660QRE 181 bp overlap
ChIP liver ENCFF515BWJ 108 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 84 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 181 bp overlap
ZBTB26 2 datasets
Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 181 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 181 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 111 bp overlap
ZBTB8A 3 datasets
ChIP HEK293 ENCFF303WRD 181 bp overlap
ChIP HEK293 ENCFF303WRD 181 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 181 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 82 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 110 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 181 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 176 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 168 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 181 bp overlap
ZNF362 3 datasets
ChIP HEK293 ENCFF436CGE 171 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 176 bp overlap
ChIP HepG2 ENCFF256AZN 181 bp overlap
ZNF384 5 datasets
ChIP HEK293T ENCFF019DZX 133 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 181 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 95 bp overlap
ChIP HepG2 ENCFF129PLC 99 bp overlap
ChIP K562 ENCFF365NXQ 79 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 181 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 181 bp overlap
ZNF441 1 dataset
ChIP HepG2 ENCFF738UDK 181 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 181 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 181 bp overlap
ZSCAN29 1 dataset
ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 80 bp overlap
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