chr6 : 50,724,393 – 50,725,108
715 bp 111 TFs 1 linked gene
This 715 bp open chromatin element is linked to TFAP2D and is bound by 111 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TFAP2D 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:50,719,393 – 50,730,108
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 243 bp overlap
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 85 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 476 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 292 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 307 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 529 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 489 bp overlap
BRD2 2 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 170 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 323 bp overlap
BRD4 2 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 468 bp overlap
ChIP thyroid-cancer GSE114068.BRD4.thyroid-cancer 207 bp overlap
Bhlha15 1 dataset
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 228 bp overlap
CDK7 1 dataset
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 224 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 213 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 346 bp overlap
CTCF 16 datasets
ChIP 22Rv1 ENCFF466OXN 437 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 279 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 332 bp overlap
ChIP GM23338 ENCFF772DML 180 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 136 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 157 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 232 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 181 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 115 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 403 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 182 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 133 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 108 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 251 bp overlap
ChIP neural progenitor cell ENCFF420RBO 310 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 100 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 164 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK3 1 dataset
Motif DE_12h DE_12h-ELK3_MA0759.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ERF::NHLH1 1 dataset
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ERG 1 dataset
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 213 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 265 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 257 bp overlap
ETV5::DRGX 1 dataset
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
EZH2 26 datasets
ChIP A673 ENCFF790MVL 356 bp overlap
ChIP A673 ENCFF790MVL 561 bp overlap
ChIP A673 ENCFF955JRZ 356 bp overlap
ChIP A673 ENCFF955JRZ 561 bp overlap
ChIP A673 ENCFF955JRZ 587 bp overlap
ChIP GM23338 ENCFF613YON 564 bp overlap
ChIP GM23338 ENCFF886DXX 237 bp overlap
ChIP H1 ENCFF232NZA 715 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 337 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 143 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 715 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 715 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 116 bp overlap
ChIP hESC GSE113817.EZH2.hESC 370 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 136 bp overlap
ChIP hepatocyte ENCFF552DZB 465 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCFF070STK 476 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 222 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 368 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 606 bp overlap
ChIP neural progenitor cell ENCFF018MKA 579 bp overlap
ChIP neural progenitor cell ENCFF018MKA 597 bp overlap
ChIP neural progenitor cell ENCFF472NFV 715 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 307 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 309 bp overlap
EZH2_phosphoT487 3 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 256 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 181 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 230 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 202 bp overlap
FOXA1 21 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 227 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 156 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 300 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 156 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 119 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 226 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 205 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 217 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 206 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 146 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 196 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 142 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 116 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 242 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 216 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 187 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 85 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 126 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 156 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 124 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 139 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 275 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 98 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 141 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 230 bp overlap
GATA6 4 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 254 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 666 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 715 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 282 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 300 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 309 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 508 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 548 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 595 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 491 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 246 bp overlap
KMT2A 2 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 173 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 263 bp overlap
MED1 1 dataset
ChIP Jurkat GSE59657.MED1.Jurkat 101 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 383 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 320 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 299 bp overlap
MYC 3 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP Jurkat GSE83777.MYC.Jurkat 113 bp overlap
ChIP NB69 GSE138295.MYC.NB69 294 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 387 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 265 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 285 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 220 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 332 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 296 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 317 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 290 bp overlap
ONECUT1 4 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 192 bp overlap
ChIP HepG2 ENCFF243FIR 281 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 441 bp overlap
ONECUT2 1 dataset
Motif DE_12h DE_12h-ONECUT2_MA0756.3 8 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 265 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 422 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 382 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 401 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 357 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 437 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
REST 2 datasets
ChIP LNCaP GSE119385.REST.LNCaP 136 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 172 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 554 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 331 bp overlap
RUNX1 4 datasets
ChIP AML GSE111821.RUNX1.AML 211 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 282 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 281 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 254 bp overlap
RUNX1-3 1 dataset
ChIP Jurkat GSE17954.RUNX1-3.Jurkat 94 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 398 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 355 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 274 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 360 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 389 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 219 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 192 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 73 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 486 bp overlap
SRSF3 2 datasets
ChIP K-562 GSE120104.SRSF3.K-562 301 bp overlap
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 269 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 195 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 314 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 715 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 264 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 471 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 466 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 548 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 255 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 249 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 255 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 330 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 133 bp overlap
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 287 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 236 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 214 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 378 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 516 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF12 1 dataset
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 125 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 170 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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