chr4 : 84,378,841 84,379,345
504 bp 94 TFs 1 linked gene
This 504 bp open chromatin element is linked to ENSG00000248749 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000248749 843 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:84,373,841 – 84,384,345
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 490 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 321 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 251 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 177 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 369 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 318 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 504 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 448 bp overlap
BRD4 3 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 504 bp overlap
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 266 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 167 bp overlap
CBX7 3 datasets
ChIP hESC GSE133412.CBX7.hESC 323 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 412 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 313 bp overlap
CDX1 2 datasets
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CEBPA 1 dataset
ChIP U-937 ERP008568.CEBPA.U-937 176 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 166 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 327 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 154 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 351 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 356 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 358 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 167 bp overlap
CREB3L1 2 datasets
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
Motif ES_0h ES_0h-CREB3L1_MA0839.2 13 bp overlap
CREB3L4 2 datasets
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
Motif ES_0h ES_0h-CREB3L4_MA1474.2 10 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 217 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 421 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 109 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 336 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 332 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 468 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 371 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 155 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 227 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 203 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 504 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 504 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 504 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 504 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HNRNPK 2 datasets
ChIP HepG2 ENCFF493GNS 86 bp overlap
ChIP HepG2 ENCFF826MXP 86 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JARID2 1 dataset
ChIP hESC GSE133412.JARID2.hESC 329 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 387 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 393 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 504 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 347 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 396 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 310 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 371 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 504 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 253 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 176 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MEF2A 2 datasets
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2D 2 datasets
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
Motif ES_0h ES_0h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 255 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 343 bp overlap
ChIP H1 ENCFF747ZPQ 201 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 504 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 504 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 298 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 504 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 495 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 443 bp overlap
ChIP hESC GSE20650.NANOG.hESC 404 bp overlap
ChIP hESC GSE18292.NANOG.hESC 337 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 210 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 230 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 336 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 238 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
ONECUT2 2 datasets
Motif DE_12h DE_12h-ONECUT2_MA0756.3 8 bp overlap
Motif ES_0h ES_0h-ONECUT2_MA0756.3 8 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap
PAX6 2 datasets
Motif DE_12h DE_12h-PAX6_MA0069.1 14 bp overlap
Motif ES_0h ES_0h-PAX6_MA0069.1 14 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 428 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 111 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 400 bp overlap
ChIP H1 ENCFF833NJP 354 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 17 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 412 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 504 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 504 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 504 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 176 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 226 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 359 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 331 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 273 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 497 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 504 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 300 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 354 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 228 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 364 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM14 4 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 236 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 504 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 369 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 299 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm14 1 dataset
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
Prdm5 2 datasets
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 504 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 504 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 370 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 237 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 290 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 333 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 465 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 82 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 184 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 176 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 126 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 150 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 415 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 396 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 392 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 344 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 196 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 7 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 321 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 254 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 504 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 220 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 327 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 457 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 504 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 372 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 495 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 431 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 369 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 329 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 424 bp overlap
SOX2 8 datasets
ChIP H9 GSE46837.SOX2.H9 176 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 221 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 234 bp overlap
ChIP hESC GSE18292.SOX2.hESC 264 bp overlap
ChIP hESC GSE69479.SOX2.hESC 216 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 361 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 188 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 259 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 216 bp overlap
SOX9 2 datasets
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 316 bp overlap
ChIP H1 ENCFF263FUH 91 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 429 bp overlap
SUZ12 5 datasets
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 305 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 245 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 285 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 283 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 315 bp overlap
Sox1 2 datasets
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
Motif ES_0h ES_0h-Sox1_MA0870.1 15 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 192 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 206 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 249 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 211 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 246 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 403 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 246 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 246 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 429 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 290 bp overlap
XBP1 2 datasets
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
Motif ES_0h ES_0h-XBP1_MA0844.2 11 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 287 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 150 bp overlap
ZFP42 2 datasets
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 400 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap