chr4 : 25,313,295 25,313,437
142 bp 90 TFs 1 linked gene
This 142 bp open chromatin element is linked to ZCCHC4 and is bound by 90 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ZCCHC4 501 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:25,308,295 – 25,318,437
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID4A 3 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 135 bp overlap
ChIP HepG2 ENCFF142DIE 95 bp overlap
ChIP HepG2 ENCFF142DIE 142 bp overlap
ARID4B 1 dataset
ChIP K562 ENCFF791HBV 80 bp overlap
ASH2L 3 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 107 bp overlap
ChIP H1 ENCFF399KAM 111 bp overlap
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 142 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 142 bp overlap
BRD2 5 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 68 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 99 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 113 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 122 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 74 bp overlap
BRD4 14 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 119 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 82 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 106 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 142 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 142 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 142 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 62 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 83 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 120 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 55 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 142 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 142 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 60 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 53 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 142 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 142 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 66 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 142 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 142 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF472NFV 142 bp overlap
FOXA1 1 dataset
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 50 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 142 bp overlap
GTF2F1 1 dataset
ChIP HepG2 ENCFF656MNI 65 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HDAC1 7 datasets
ChIP HepG2 ENCFF750ZWM 55 bp overlap
ChIP HepG2 ENCFF750ZWM 142 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.HDAC1.MCF-7_ARID1A-KO 142 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 142 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 79 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 142 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 142 bp overlap
HNF4A 7 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 142 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 142 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 137 bp overlap
ChIP HepG2 ENCFF146SSF 142 bp overlap
ChIP liver ENCFF354NRH 142 bp overlap
ChIP liver ENCFF449HPV 142 bp overlap
ChIP liver ERP002306.HNF4A.liver 106 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 125 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 142 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 142 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 115 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 142 bp overlap
KDM5A 2 datasets
ChIP A549 ENCFF513MKL 56 bp overlap
ChIP HepG2 ENCFF105YGO 119 bp overlap
KLF13 2 datasets
ChIP K-562 ENCSR608HVP.KLF13.K-562 142 bp overlap
ChIP K562 ENCFF738YZC 142 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 142 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 142 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 142 bp overlap
KLF9 5 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 137 bp overlap
ChIP HEK293 ENCFF588INF 125 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 142 bp overlap
ChIP MCF-7 ENCFF618FCM 142 bp overlap
ChIP MCF-7 ENCSR125ZYC.KLF9.MCF-7 142 bp overlap
KMT2A 5 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 142 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 142 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 91 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 118 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 142 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 88 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 142 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 126 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 122 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 142 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 78 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 139 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 142 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 137 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 142 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 142 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 134 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
Nr2f6 1 dataset
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 142 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 140 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 142 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 83 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RB1 1 dataset
ChIP MCF-7_siGFP GSE98728.RB1.MCF-7_siGFP 142 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 142 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 111 bp overlap
RNF219 2 datasets
ChIP HepG2 ENCFF710YJO 142 bp overlap
ChIP HepG2 ENCFF710YJO 142 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 142 bp overlap
RXRB 1 dataset
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 70 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 142 bp overlap
SIN3A 8 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 142 bp overlap
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 104 bp overlap
ChIP K-562 ENCSR920BLG.SIN3A.K-562 139 bp overlap
ChIP K-562 ENCSR000BLR.SIN3A.K-562 95 bp overlap
ChIP K562 ENCFF397YHR 142 bp overlap
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 142 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 142 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
SIX1 2 datasets
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 98 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 82 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 142 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 142 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 142 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 142 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 50 bp overlap
SP1 2 datasets
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF123KAM 103 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 109 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 142 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 122 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 109 bp overlap
STAT3 2 datasets
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 142 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 114 bp overlap
Six4 1 dataset
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 132 bp overlap
TAF7 1 dataset
ChIP K-562 ENCSR671GFC.TAF7.K-562 111 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 68 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 142 bp overlap
VDR 1 dataset
ChIP primary-prostate-epithelial-cell GSE124576.VDR.primary-prostate-epithelial-cell 142 bp overlap
YAP1 1 dataset
ChIP OVCAR-5 GSE57236.YAP1.OVCAR-5 83 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 142 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 62 bp overlap
YY1AP1 1 dataset
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 142 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF215OUF 142 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752POA 60 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 142 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 55 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 142 bp overlap
ZHX2 1 dataset
ChIP MCF-7 ENCFF733XRY 142 bp overlap
ZNF20 1 dataset
ChIP HepG2 ENCFF518BKZ 142 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 142 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 91 bp overlap
ZNF589 1 dataset
ChIP K562 ENCFF770FHN 142 bp overlap