chr3 : 181,719,364 – 181,719,952
588 bp 89 TFs 3 linked genes
This 588 bp open chromatin element is linked to SOX2, ENSG00000289435, and SOX2-OT and is bound by 89 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX2 7.4 kb Proximal Proximity
ENSG00000289435 7.6 kb Proximal Proximity
SOX2-OT 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:181,714,364 – 181,724,952
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 184 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 184 bp overlap
AR 4 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 208 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 115 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 180 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 298 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 383 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 344 bp overlap
ATF2 2 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 203 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 154 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 566 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 141 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 297 bp overlap
BRD4 6 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 219 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 178 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 321 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 471 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 189 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 588 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 449 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 314 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 114 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 236 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 207 bp overlap
CREB1 3 datasets
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 360 bp overlap
ChIP HepG2 ENCFF792THT 225 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 199 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 93 bp overlap
CTCF 7 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 232 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 311 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 365 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 237 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 113 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 243 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 195 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 233 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 218 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 233 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 331 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 255 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 222 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 465 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 242 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 320 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 464 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 241 bp overlap
EZH2 20 datasets
ChIP B cell ENCFF803EMO 215 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 247 bp overlap
ChIP DOHH2 ENCFF528GDC 203 bp overlap
ChIP DOHH2 ENCFF528GDC 441 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 225 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 50 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 448 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 420 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 588 bp overlap
ChIP T98G GSE112240.EZH2.T98G 471 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 588 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 124 bp overlap
ChIP astrocyte ENCFF365JTP 351 bp overlap
ChIP fibroblast of lung ENCFF479BAW 167 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 588 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 588 bp overlap
ChIP keratinocyte ENCFF070STK 577 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 463 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 411 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 197 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 71 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 219 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 280 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 524 bp overlap
GATA2 1 dataset
ChIP ME-1 GSE46044.GATA2.ME-1 193 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 138 bp overlap
GATA6 3 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 53 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 261 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 172 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 434 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 278 bp overlap
HNRNPLL 1 dataset
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 181 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 62 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 74 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 142 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 184 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 432 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 230 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 142 bp overlap
KDM5B 2 datasets
ChIP SUM185 GSE46055.KDM5B.SUM185 375 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 582 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 488 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 92 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 192 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 156 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 419 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 355 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 406 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 185 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 180 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 469 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 279 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 275 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 288 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 377 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 588 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 389 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 328 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 430 bp overlap
POLR2A 4 datasets
ChIP H1 ENCFF566JSR 297 bp overlap
ChIP H1 ENCFF566JSR 196 bp overlap
ChIP sigmoid colon ENCFF748YVT 101 bp overlap
ChIP tibial nerve ENCFF983HAU 324 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 265 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 295 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 326 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 247 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 162 bp overlap
RELA 1 dataset
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 124 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 165 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 63 bp overlap
RNF2 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 230 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 281 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 505 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 486 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 230 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 159 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 184 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 206 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 180 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 163 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 442 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 128 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 314 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 267 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 256 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 301 bp overlap
SUZ12 3 datasets
ChIP GM12878 ENCFF498QAM 293 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 588 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 240 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 210 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 206 bp overlap
TCF7L2 1 dataset
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 205 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 199 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 189 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 227 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 222 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 236 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 364 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 337 bp overlap
ZFX 2 datasets
ChIP MCF-7 GSE102616.ZFX.MCF-7 479 bp overlap
ChIP PrEC GSE102616.ZFX.PrEC 550 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 390 bp overlap
ChIP WTC11 ENCFF352POG 488 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 479 bp overlap
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