chr3 : 147,404,629 147,406,048
1,419 bp 119 TFs 1 linked gene
This 1.4 kb open chromatin element is linked to ZIC4 and is bound by 119 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ZIC4 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:147,399,629 – 147,411,048
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 290 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 1393 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 230 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 235 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD4 6 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 493 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 448 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 382 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 374 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 296 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 656 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 105 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 545 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 424 bp overlap
CTCF 10 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 125 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 158 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 345 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 116 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 242 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 252 bp overlap
E2F6 5 datasets
ChIP H1 ENCFF785DWK 129 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 257 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 365 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
EGR1 2 datasets
ChIP MCF-7 ENCFF679ZBN 341 bp overlap
ChIP MCF-7 ENCFF679ZBN 341 bp overlap
ERF::NHLH1 4 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 239 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 308 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 399 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 290 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 355 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 32 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 383 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 380 bp overlap
ChIP GM23338 ENCFF613YON 85 bp overlap
ChIP GM23338 ENCFF613YON 1061 bp overlap
ChIP GM23338 ENCFF886DXX 357 bp overlap
ChIP H1 ENCFF232NZA 1419 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 887 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 763 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 453 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 276 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 786 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 284 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 268 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 160 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 190 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 256 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 694 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 252 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 517 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 313 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 521 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP hepatocyte ENCFF552DZB 207 bp overlap
ChIP hepatocyte ENCFF552DZB 465 bp overlap
ChIP keratinocyte ENCFF070STK 538 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 432 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 866 bp overlap
ChIP neural progenitor cell ENCFF018MKA 1419 bp overlap
ChIP neural progenitor cell ENCFF472NFV 1419 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FERD3L 2 datasets
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 236 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 321 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 488 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 737 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 264 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 350 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HCFC1R1 2 datasets
ChIP cartilage GSE100311.HCFC1R1.cartilage 341 bp overlap
ChIP cartilage GSE100311.HCFC1R1.cartilage 389 bp overlap
HDAC1 1 dataset
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 144 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 157 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 246 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
HNRNPL 1 dataset
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 195 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 264 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 252 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JARID2 3 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 245 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 1411 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 298 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 319 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 411 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 462 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 668 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 337 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 694 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 191 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 338 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 363 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 287 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 387 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 194 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 434 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 1303 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 185 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 311 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 210 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 210 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 234 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 688 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 264 bp overlap
REST 2 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 417 bp overlap
ChIP H1 ENCFF239FFS 664 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 169 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 1278 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 423 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 308 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 843 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 213 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 385 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 276 bp overlap
SMARCC1 6 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 616 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 321 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 65 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 418 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 714 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 1172 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 559 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 291 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 1377 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 948 bp overlap
SUZ12 9 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 634 bp overlap
ChIP H1 ENCFF881NFR 1419 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 503 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 440 bp overlap
ChIP NT2/D1 ENCFF574SXS 292 bp overlap
ChIP NT2/D1 ENCFF574SXS 74 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 1038 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 220 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 221 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 127 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 140 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 147 bp overlap
TFAP2A 4 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 332 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 556 bp overlap
ChIP AF22 GSE84259.TRIM28.AF22 393 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 416 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 333 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 195 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap