chr3 : 129,974,492 – 129,975,144
652 bp 107 TFs 1 linked gene
This 652 bp open chromatin element is linked to TRH and is bound by 107 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRH at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,969,492 – 129,980,144
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 574 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 246 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 131 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 652 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 252 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 652 bp overlap
BRD4 7 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 432 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 518 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 205 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 359 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 591 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 209 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 324 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 309 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 286 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 642 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 649 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 167 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 227 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 481 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 86 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 356 bp overlap
CTCFL 2 datasets
ChIP K-562 GSE70764.CTCFL.K-562 220 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 175 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 240 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 491 bp overlap
ELF1 2 datasets
ChIP ME-1 GSE46044.ELF1.ME-1 257 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 219 bp overlap
ELK1 1 dataset
Motif DE_12h DE_12h-ELK1_MA0028.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
ERG 9 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 255 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 221 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 261 bp overlap
ChIP K-562 GSE23730.ERG.K-562 192 bp overlap
ChIP K-562 GSE23730.ERG.K-562 161 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 216 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 185 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 107 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 265 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 374 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 227 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 176 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 159 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 652 bp overlap
ETS1 2 datasets
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 195 bp overlap
ETV4 1 dataset
Motif DE_12h DE_12h-ETV4_MA0764.4 9 bp overlap
ETV5 1 dataset
Motif DE_12h DE_12h-ETV5_MA0765.4 9 bp overlap
EZH2 37 datasets
ChIP A673 ENCFF790MVL 652 bp overlap
ChIP A673 ENCFF955JRZ 652 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 413 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 270 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 456 bp overlap
ChIP GM23248 ENCFF404ZHM 142 bp overlap
ChIP GM23338 ENCFF613YON 417 bp overlap
ChIP H1 ENCFF232NZA 652 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 122 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 652 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 198 bp overlap
ChIP SK-N-MC ENCFF434OHW 356 bp overlap
ChIP SK-N-MC ENCFF674XUJ 356 bp overlap
ChIP SK-N-MC ENCFF674XUJ 356 bp overlap
ChIP T98G GSE112240.EZH2.T98G 71 bp overlap
ChIP astrocyte ENCFF365JTP 652 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 182 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 652 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 652 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 652 bp overlap
ChIP hepatocyte ENCFF118DKH 280 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF552DZB 652 bp overlap
ChIP hepatocyte ENCFF552DZB 652 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 591 bp overlap
ChIP keratinocyte ENCFF070STK 195 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 295 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 295 bp overlap
ChIP myotube ENCFF857GWB 247 bp overlap
ChIP myotube ENCFF857GWB 167 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 652 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 652 bp overlap
ChIP neural progenitor cell ENCFF018MKA 652 bp overlap
ChIP neural progenitor cell ENCFF472NFV 652 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 211 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 510 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 357 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 176 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 172 bp overlap
FEV 1 dataset
Motif DE_12h DE_12h-FEV_MA0156.4 9 bp overlap
FLI1 4 datasets
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 316 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 145 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 224 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 297 bp overlap
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 517 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 429 bp overlap
FOXO1 2 datasets
ChIP CD34 GSE80773.FOXO1.CD34 183 bp overlap
ChIP CD34 GSE80773.FOXO1.CD34 168 bp overlap
GATA2 1 dataset
ChIP ME-1 GSE46044.GATA2.ME-1 206 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 507 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 233 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 203 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 491 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 436 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 180 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 165 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 249 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 299 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 294 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 363 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 289 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 596 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 313 bp overlap
KDM1A 8 datasets
ChIP H1 ENCFF696SGD 504 bp overlap
ChIP SET-2 GSE121424.KDM1A.SET-2 226 bp overlap
ChIP SKNO-1_DMSO GSE71739.KDM1A.SKNO-1_DMSO 367 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 397 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 423 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 403 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 399 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 484 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 323 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 570 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 169 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 318 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 219 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 2 datasets
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 2 datasets
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KMT2A 2 datasets
ChIP L826 GSE83671.KMT2A.L826 182 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 634 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 278 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 323 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 189 bp overlap
ChIP CD34 GSE85488.MYC.CD34 123 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 433 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 100 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 234 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 365 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 652 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 652 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 652 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 294 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 236 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 361 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 477 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 321 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 221 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 529 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 619 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 184 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 652 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 649 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 281 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 209 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 305 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 150 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 311 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 597 bp overlap
ChIP H1 ENCFF239FFS 528 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 242 bp overlap
RUNX1 5 datasets
ChIP AML GSE111821.RUNX1.AML 268 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 441 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 441 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 253 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 238 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 226 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 368 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 612 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 652 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 156 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 110 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 254 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 300 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 652 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 652 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 611 bp overlap
STAT3 2 datasets
ChIP WA01 ERP004237.STAT3.WA01 290 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 232 bp overlap
SUZ12 11 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 620 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 352 bp overlap
ChIP H1 ENCFF881NFR 652 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 337 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 641 bp overlap
ChIP NT2/D1 ENCFF574SXS 346 bp overlap
ChIP NT2/D1 ENCFF574SXS 415 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 516 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 79 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 179 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 393 bp overlap
TAL1 2 datasets
ChIP ME-1 GSE46044.TAL1.ME-1 259 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 260 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 272 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 119 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 603 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 190 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 650 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 269 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 501 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 652 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZEB1 2 datasets
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 178 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 120 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 112 bp overlap
ZNF669 1 dataset
Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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