chr3 : 123,571,319 123,571,775
456 bp 101 TFs 3 linked genes
This 456 bp open chromatin element is linked to HACD2, MYLK-AS1, and ADCY5 and is bound by 101 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
HACD2 13.5 kb Distal Multiome
MYLK-AS1 13.7 kb Distal Multiome
ADCY5 123.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:123,566,319 – 123,576,775
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_36h DE_36h-ARNT2_MA1464.2 8 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 199 bp overlap
Arnt 1 dataset
Motif DE_36h DE_36h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_36h DE_36h-Arntl_MA0603.2 8 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 213 bp overlap
BCL6B 3 datasets
Motif DE_36h DE_36h-BCL6B_MA0731.1 17 bp overlap
ChIP HEK293 ENCFF555YRB 365 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 372 bp overlap
BHLHE40 8 datasets
Motif DE_36h DE_36h-BHLHE40_MA0464.3 8 bp overlap
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 126 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 300 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 206 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 128 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 202 bp overlap
ChIP K562 ENCFF923NJI 311 bp overlap
BHLHE41 1 dataset
Motif DE_36h DE_36h-BHLHE41_MA0636.1 10 bp overlap
BRD2 2 datasets
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 279 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 310 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 112 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.CEBPA.Kasumi-1_SIRUNX1ETO 193 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 190 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 237 bp overlap
EHF 2 datasets
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF3 2 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 202 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 93 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 222 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 283 bp overlap
Elf5 2 datasets
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
FOXA2 1 dataset
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap
GATA2 3 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 437 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 263 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 224 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 241 bp overlap
ChIP DE DE-GATA4-2 379 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 360 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 456 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 456 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 387 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 456 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 456 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 336 bp overlap
GFI1B 1 dataset
ChIP CD34 GSE52924.GFI1B.CD34 102 bp overlap
GLI3 1 dataset
Motif DE_36h DE_36h-GLI3_MA1491.3 15 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 280 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 388 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 456 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 218 bp overlap
Gli1 2 datasets
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
HES1 1 dataset
Motif DE_36h DE_36h-HES1_MA1099.3 8 bp overlap
HES2 1 dataset
Motif DE_36h DE_36h-HES2_MA0616.3 9 bp overlap
HES6 1 dataset
Motif DE_36h DE_36h-HES6_MA1493.1 10 bp overlap
HEY2 1 dataset
Motif DE_36h DE_36h-HEY2_MA0649.2 9 bp overlap
HIF1A 1 dataset
Motif DE_36h DE_36h-HIF1A_MA1106.2 6 bp overlap
Hand1 3 datasets
Motif DE_36h DE_36h-Hand1_MA2123.1 9 bp overlap
Motif DE_36h DE_36h-Hand1_MA2123.1 9 bp overlap
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 302 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 310 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 194 bp overlap
MAFF 2 datasets
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MAX 7 datasets
Motif DE_36h DE_36h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 188 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 231 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 240 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 223 bp overlap
ChIP WTC11 ENCFF223QFY 456 bp overlap
MECOM 1 dataset
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 226 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MITF 6 datasets
ChIP 501-mel GSE137522.MITF.501-mel 315 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 275 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 331 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 375 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 204 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 219 bp overlap
MLX 1 dataset
Motif DE_36h DE_36h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif DE_36h DE_36h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_36h DE_36h-MNT_MA0825.2 6 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 363 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 139 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 186 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 342 bp overlap
Mlxip 1 dataset
Motif DE_36h DE_36h-Mlxip_MA0622.2 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 292 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 179 bp overlap
NFE2 2 datasets
ChIP ProEs GSE59087.NFE2.ProEs 64 bp overlap
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 155 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 267 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
RAD21 1 dataset
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 157 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 133 bp overlap
RUNX1 1 dataset
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 215 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 160 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 92 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 392 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 350 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 373 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 354 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 345 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 302 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 413 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 363 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 93 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 175 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 340 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 282 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 184 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 188 bp overlap
SOHLH2 1 dataset
Motif DE_36h DE_36h-SOHLH2_MA1560.2 8 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 408 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 246 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap
SPI1 29 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 155 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 173 bp overlap
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 257 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 310 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 200 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 272 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 218 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 284 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 163 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 155 bp overlap
ChIP HL-60 ENCFF645GBT 73 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 212 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 132 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 228 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 273 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 279 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 213 bp overlap
ChIP RS4-11 GSE71616.SPI1.RS4-11 172 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 234 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 157 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 198 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 274 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 213 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 165 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 183 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 240 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 172 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 229 bp overlap
STAT1 1 dataset
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 183 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 203 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 375 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 136 bp overlap
TCF3 1 dataset
Motif DE_36h DE_36h-TCF3_MA0522.4 7 bp overlap
TCF7L2 2 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 192 bp overlap
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
TCFL5 1 dataset
Motif DE_36h DE_36h-TCFL5_MA0632.3 8 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 401 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 202 bp overlap
TFEB 1 dataset
Motif DE_36h DE_36h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_36h DE_36h-TFEC_MA0871.3 8 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 147 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 150 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 257 bp overlap
ChIP WTC11 ENCFF699QGS 395 bp overlap
USF2 4 datasets
ChIP GM12878 GSE97661.USF2.GM12878 211 bp overlap
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 128 bp overlap
ChIP WTC11 ENCFF139JAW 110 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 129 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 160 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZSCAN31 1 dataset
Motif DE_36h DE_36h-ZSCAN31_MA1722.2 18 bp overlap