chr3 : 61,683,042 61,683,518
476 bp 111 TFs 0 linked genes
This 476 bp open chromatin element has no linked target genes and is bound by 111 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:61,678,042 – 61,688,518
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 151 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 370 bp overlap
ATF3 4 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 330 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 277 bp overlap
ChIP HCT116 ENCFF088WVX 259 bp overlap
ChIP HCT116 ENCFF088WVX 371 bp overlap
ATXN7L3 1 dataset
ChIP HCT-116_thaps GSE121798.ATXN7L3.HCT-116_thaps 475 bp overlap
BATF 1 dataset
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 241 bp overlap
BCL11A 1 dataset
ChIP HEK293 ENCFF294OHB 73 bp overlap
BRD4 4 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 211 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 271 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 279 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 211 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 296 bp overlap
CBX3 2 datasets
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 168 bp overlap
ChIP HCT116 ENCFF947BOL 278 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 181 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 136 bp overlap
CEBPB 2 datasets
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 306 bp overlap
ChIP HCT116 ENCFF097OLY 129 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 476 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 403 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 69 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 394 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 337 bp overlap
ChIP thyroid gland ENCFF748ICQ 172 bp overlap
DDX20 1 dataset
ChIP MCF-7 ENCFF142TOQ 185 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 387 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 366 bp overlap
EGR1 2 datasets
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 191 bp overlap
ChIP HCT116 ENCFF456NPQ 306 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 53 bp overlap
ChIP tibial nerve ENCFF346AYA 97 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 198 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 263 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 174 bp overlap
FOS 2 datasets
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 186 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 231 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 333 bp overlap
ChIP HCT116 ENCFF540ZXN 225 bp overlap
GATA6 1 dataset
ChIP DE_D1 S41-DE-d1-GATA6-exp2 314 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 347 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 102 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 284 bp overlap
ChIP GM12878 ENCFF824TGK 283 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 341 bp overlap
ChIP GM12878 ENCFF918AID 289 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 339 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 356 bp overlap
IRF4 6 datasets
ChIP B-cell GSE142493.IRF4.B-cell 253 bp overlap
ChIP BC-3 GSE132777.IRF4.BC-3 367 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 235 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 293 bp overlap
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 192 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 179 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 274 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 301 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 285 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 340 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 176 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 195 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 169 bp overlap
JUND 2 datasets
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 318 bp overlap
ChIP HCT116 ENCFF748ZQX 188 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 254 bp overlap
MAX 3 datasets
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 178 bp overlap
ChIP HCT116 ENCFF810LEN 293 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap
MED1 3 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 149 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 60 bp overlap
ChIP RH4 GSE83726.MED1.RH4 352 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 163 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 233 bp overlap
MTA2 3 datasets
ChIP GM12878 ENCFF615CWQ 321 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 274 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 476 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 145 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 103 bp overlap
MYCN 4 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 313 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 50 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 136 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 234 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 275 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 270 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 476 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 328 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 326 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 376 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 336 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 367 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 342 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 261 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 300 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 133 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 460 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 83 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 102 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 82 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 247 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 161 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 272 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 239 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 192 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 239 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 146 bp overlap
PAX8 1 dataset
ChIP MCF-7 ENCFF361SPS 325 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 203 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 187 bp overlap
POLR2A 7 datasets
ChIP breast epithelium ENCFF960NNA 160 bp overlap
ChIP prostate gland ENCFF881OMH 52 bp overlap
ChIP sigmoid colon ENCFF748YVT 232 bp overlap
ChIP suprapubic skin ENCFF748PRQ 81 bp overlap
ChIP thyroid gland ENCFF979LRR 274 bp overlap
ChIP thyroid gland ENCFF979LRR 75 bp overlap
ChIP transverse colon ENCFF610RWV 74 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 175 bp overlap
PRDM4 1 dataset
ChIP HCT-116_B3 GSE152144.PRDM4.HCT-116_B3 146 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 208 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 91 bp overlap
RAD21 7 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 383 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 389 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 459 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 357 bp overlap
ChIP HCT116 ENCFF568PEO 255 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 219 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 65 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 276 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 122 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 137 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 429 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 344 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 383 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 175 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 210 bp overlap
SIN3A 2 datasets
ChIP HCT-116 ENCSR000BSG.SIN3A.HCT-116 185 bp overlap
ChIP HCT116 ENCFF203YBB 370 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 434 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 333 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 299 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 330 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 359 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 371 bp overlap
SMARCA2 8 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 255 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 200 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 90 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 260 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 81 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 67 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 270 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 476 bp overlap
SMARCA4 5 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 121 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 183 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 171 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 437 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 218 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 188 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 365 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 394 bp overlap
SMARCC1 2 datasets
ChIP HCT-116_F1 GSE152144.SMARCC1.HCT-116_F1 214 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 122 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 332 bp overlap
ChIP LK2 GSE137459.SOX2.LK2 195 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 277 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
SP1 3 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 314 bp overlap
ChIP HCT116 ENCFF800LBN 135 bp overlap
ChIP HCT116 ENCFF800LBN 430 bp overlap
SP3 1 dataset
ChIP HEK293 ENCFF087XLA 183 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 247 bp overlap
SRF 2 datasets
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 116 bp overlap
ChIP HCT116 ENCFF497JOF 285 bp overlap
STAT3 2 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 142 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 140 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 143 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 303 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 275 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 190 bp overlap
TEAD4 1 dataset
ChIP HCT116 ENCFF526YYD 277 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 168 bp overlap
TRIM22 3 datasets
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 108 bp overlap
ChIP MCF-7 ENCFF596XRL 193 bp overlap
ChIP MCF-7 ENCFF596XRL 371 bp overlap
TWIST1 1 dataset
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 149 bp overlap
YY1 4 datasets
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 139 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 253 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 233 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 134 bp overlap
YY2 1 dataset
ChIP HEK293 ENCSR692HSE.YY2.HEK293 228 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 78 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 234 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 221 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 68 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 116 bp overlap
ChIP HEK293 ENCFF799ATK 318 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 197 bp overlap
ZNF623 1 dataset
ChIP HEK293 ENCFF505YHP 214 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 195 bp overlap