chr2 : 150,735,380 150,736,392
1,012 bp 117 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to RND3 and is bound by 117 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RND3 248.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:150,730,380 – 150,741,392
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
117 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 623 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 566 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 197 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 194 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 264 bp overlap
BRD4 1 dataset
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 205 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 176 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 150 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 361 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 545 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 499 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 481 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 412 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 574 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 169 bp overlap
ChIP hESC GSE17917.EP300.hESC 568 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 280 bp overlap
ETV2::HOXB13 2 datasets
Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap
Motif ES_0h ES_0h-ETV2HOXB13_MA1943.2 13 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOXJ3 1 dataset
ChIP WTC11 ENCFF909BTK 405 bp overlap
FOXO6 1 dataset
Motif ES_0h ES_0h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 151 bp overlap
ChIP H9 GSE31006.FOXP1.H9 252 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 274 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 312 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 645 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 210 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 171 bp overlap
HSF1 1 dataset
Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 521 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 660 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 496 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 628 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 103 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 457 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 479 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 284 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 399 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 343 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 331 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 366 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 102 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 641 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 1012 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 755 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 312 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 937 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 855 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 827 bp overlap
ChIP hESC GSE18292.NANOG.hESC 618 bp overlap
ChIP hESC GSE20650.NANOG.hESC 613 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 590 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 410 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 558 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 527 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 447 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 560 bp overlap
NR6A1 1 dataset
Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 63 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 485 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU2F3 5 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 334 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 249 bp overlap
POU4F1 1 dataset
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 20 datasets
ChIP BG03 GSE21614.POU5F1.BG03 301 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 133 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 841 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 453 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 740 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 336 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 303 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 530 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 668 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 539 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 511 bp overlap
ChIP hESC GSE20650.POU5F1.hESC 211 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 814 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 353 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 511 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 162 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 656 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 425 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 495 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 374 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 266 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 248 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 665 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 540 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 649 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 380 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 502 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 396 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 319 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 325 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 251 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 206 bp overlap
SMARCA4 6 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 265 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 238 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 524 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 626 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 652 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 819 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 519 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 772 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 458 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 613 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 776 bp overlap
SOX13 1 dataset
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX18 2 datasets
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 10 datasets
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP H9 GSE46837.SOX2.H9 538 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 576 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 185 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 182 bp overlap
ChIP hESC GSE69479.SOX2.hESC 369 bp overlap
ChIP hESC GSE18292.SOX2.hESC 329 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 493 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 533 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 319 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 163 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SRY 2 datasets
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
Sox17 3 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
Sox5 3 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 3 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 3 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 324 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 1 dataset
ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 133 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 394 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 263 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 232 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 329 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 233 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 346 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 148 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 110 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 258 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 485 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF133 1 dataset
ChIP HEK293T GSE78099.ZNF133.HEK293T 202 bp overlap
ZNF136 2 datasets
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 600 bp overlap
ZNF214 1 dataset
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF282 1 dataset
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 279 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap