chrX : 106,902,841 106,903,946
1,105 bp 100 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to RIPPLY1 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RIPPLY1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:106,897,841 – 106,908,946
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 134 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 235 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 336 bp overlap
BRD4 4 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 415 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 241 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 366 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 403 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 83 bp overlap
CCAR2 2 datasets
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 81 bp overlap
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 108 bp overlap
CHD2 1 dataset
ChIP Hep-G2 ENCSR000EED.CHD2.Hep-G2 159 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF576ERP 256 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 381 bp overlap
EBF1 6 datasets
ChIP ASC GSE54889.EBF1.ASC 138 bp overlap
Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap
ChIP GM12878 ENCFF167CZS 150 bp overlap
ChIP GM12878 ENCFF813OXE 154 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 308 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 361 bp overlap
EBF3 1 dataset
Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 131 bp overlap
ChIP liver ENCSR736BUG.EGR1.liver 105 bp overlap
EHMT2 2 datasets
ChIP HepG2 ENCFF004KYI 154 bp overlap
ChIP HepG2 ENCFF004KYI 359 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
ChIP hESC GSE26097.EOMES.hESC 328 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 146 bp overlap
ChIP Hep-G2 ENCSR000EDV.EP300.Hep-G2 112 bp overlap
ChIP HepG2 ENCFF354ACD 156 bp overlap
ESR1 3 datasets
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 290 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 129 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 197 bp overlap
Ebf2 1 dataset
Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 171 bp overlap
FOXA1 1 dataset
ChIP HepG2 ENCFF740VZW 134 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 101 bp overlap
ChIP DE DE-FOXA2-1 694 bp overlap
ChIP DE DE-FOXA2-2 483 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 118 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 148 bp overlap
ChIP DE DE-GATA4-2 440 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 237 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 166 bp overlap
ChIP DE DE-GATA6-2 398 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 272 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 560 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 337 bp overlap
ChIP foregut GSE117136.GATA6.foregut 55 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 195 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 228 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 324 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 386 bp overlap
HNF1A 1 dataset
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 103 bp overlap
HNF4A 10 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 66 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 181 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 73 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 74 bp overlap
ChIP HepG2 ENCFF146SSF 170 bp overlap
ChIP HepG2 ENCFF669NAM 93 bp overlap
ChIP liver ENCFF354NRH 145 bp overlap
ChIP liver ENCFF449HPV 143 bp overlap
ChIP liver ERP002306.HNF4A.liver 107 bp overlap
HNF4G 4 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF323ATZ 115 bp overlap
ChIP liver ENCFF170YNZ 168 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 118 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 114 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 152 bp overlap
JUND 1 dataset
ChIP liver ENCSR837GTK.JUND.liver 162 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 328 bp overlap
MAX 5 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF507HCX 324 bp overlap
ChIP liver ENCFF584QGB 164 bp overlap
ChIP liver ENCSR521IID.MAX.liver 57 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 88 bp overlap
MED1 1 dataset
ChIP Hep-G2 GSE76893.MED1.Hep-G2 67 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 146 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 446 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 111 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 272 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 422 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 282 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 163 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 251 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 258 bp overlap
Msgn1 1 dataset
Motif DE_48h DE_48h-Msgn1_MA1524.3 10 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 377 bp overlap
ChIP RMG-I GSE120058.NCAPH2.RMG-I 381 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 201 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 288 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 160 bp overlap
NFYB 1 dataset
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 247 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 123 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 78 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF526NOJ 225 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 138 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 303 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 167 bp overlap
PROX1 2 datasets
ChIP HepG2 ENCFF016ZJS 254 bp overlap
ChIP HepG2 ENCFF016ZJS 455 bp overlap
PRPF4 4 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 182 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 179 bp overlap
ChIP HepG2 ENCFF431ZRN 156 bp overlap
ChIP HepG2 ENCFF645WCL 151 bp overlap
RAD21 1 dataset
ChIP HepG2 ENCFF906QIS 130 bp overlap
RELA 1 dataset
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
RELB 1 dataset
Motif DE_48h DE_48h-RELB_MA1117.2 7 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 115 bp overlap
RXRA 4 datasets
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 226 bp overlap
ChIP HepG2 ENCFF763IEA 315 bp overlap
ChIP liver ENCFF077DAP 214 bp overlap
ChIP liver ENCFF807CIA 178 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 198 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 493 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 343 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 425 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 282 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 459 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 368 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 226 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 143 bp overlap
SMARCC1 2 datasets
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 180 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 332 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 63 bp overlap
ChIP HepG2 ENCFF767OCK 257 bp overlap
ChIP HepG2 ENCFF767OCK 458 bp overlap
SP1 3 datasets
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 184 bp overlap
ChIP HepG2 ENCFF123KAM 86 bp overlap
ChIP liver ENCFF769YSM 136 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 80 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 272 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 227 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 320 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 336 bp overlap
TBP 1 dataset
ChIP Hep-G2 ENCSR000EEL.TBP.Hep-G2 79 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 304 bp overlap
TCF7L2 1 dataset
ChIP HepG2 ENCFF510OLG 202 bp overlap
TFAP4 2 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 183 bp overlap
ChIP HepG2 ENCFF932XOY 267 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 245 bp overlap
THRB 2 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 243 bp overlap
ChIP HepG2 ENCFF476INC 286 bp overlap
U2AF1 2 datasets
ChIP Hep-G2 ENCSR868JLS.U2AF1.Hep-G2 163 bp overlap
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 148 bp overlap
XRCC5 1 dataset
ChIP HepG2 ENCFF330PDO 291 bp overlap
YY1 4 datasets
ChIP liver ENCFF400MBC 254 bp overlap
ChIP liver ENCFF400MBC 239 bp overlap
ChIP liver ENCFF515BWJ 184 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 210 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 102 bp overlap
ZEB1 1 dataset
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 101 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 165 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 191 bp overlap
ZMYM4 1 dataset
ChIP HepG2 ENCFF567SQY 222 bp overlap
ZNF12 1 dataset
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 138 bp overlap
ZNF281 1 dataset
ChIP HepG2 ENCFF585QNU 103 bp overlap