chrX : 71,957,980 71,958,453
473 bp 90 TFs 3 linked genes
This 473 bp open chromatin element is linked to NHSL2, PIN4, and ERCC6L and is bound by 90 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
NHSL2 47.2 kb Distal Multiome
PIN4 223.6 kb Distal Multiome
ERCC6L 280.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:71,952,980 – 71,963,453
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_trough_DMSO GSE85096.ARNTL.U2OS_trough_DMSO 110 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 473 bp overlap
ChIP H1 ENCFF399KAM 473 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 473 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 414 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 113 bp overlap
BRD4 7 datasets
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 389 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 157 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 140 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 195 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 165 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 251 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 210 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 280 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 199 bp overlap
CHD7 4 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 167 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 98 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 473 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 234 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 473 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 325 bp overlap
CTNNB1 2 datasets
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 252 bp overlap
ChIP hiPSC_TT-neg_D2 GSE132532.CTNNB1.hiPSC_TT-neg_D2 188 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000AUQ.EP300.WA01 210 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 224 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 222 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 152 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 445 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 350 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 227 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 408 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-2 190 bp overlap
ChIP foregut GSE117136.GATA4.foregut 365 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 223 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 473 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 232 bp overlap
ChIP DE DE-GATA6-2 366 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 106 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 174 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 373 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 148 bp overlap
ChIP foregut GSE117136.GATA6.foregut 473 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 209 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 373 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 345 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 473 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 121 bp overlap
JUN 7 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 399 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 473 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 100 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 327 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 197 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 58 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 143 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 220 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 176 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 85 bp overlap
ChIP K562 ENCFF320GSD 127 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 298 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 169 bp overlap
ChIP A-673 GSE119971.MYBL2.A-673 118 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 105 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 200 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 84 bp overlap
NANOG 9 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 473 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 160 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 154 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 111 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 206 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 84 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 206 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 79 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 187 bp overlap
NIPBL 2 datasets
ChIP WA09 GSE105028.NIPBL.WA09 51 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 261 bp overlap
NR2F2 6 datasets
ChIP liver ENCFF427MRU 205 bp overlap
ChIP liver ENCFF565JGD 262 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 147 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 172 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 181 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 175 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 178 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 90 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 135 bp overlap
PDX1 5 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 80 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 104 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 98 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 190 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 473 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 208 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 250 bp overlap
ChIP H1 ENCFF770YBQ 333 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 71 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 123 bp overlap
ChIP GM23338 ENCFF333SNB 177 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 473 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 149 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 266 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 214 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 191 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 60 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 399 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 226 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 210 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 326 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 124 bp overlap
RARA 1 dataset
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 64 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 185 bp overlap
ChIP H1 ENCFF905HFL 450 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 473 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 182 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 186 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 185 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 473 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 123 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 126 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 75 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 67 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 154 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 165 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 148 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 198 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 157 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 141 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 230 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 473 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 218 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 263 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 211 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 247 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 424 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 262 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 217 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 230 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 162 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 151 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 91 bp overlap
SMARCA4 13 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 348 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 182 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 205 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 69 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 160 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 144 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 72 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 246 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 268 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 107 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 127 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 354 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 215 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 65 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 182 bp overlap
SMARCC1 8 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 349 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 110 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 69 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 137 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 231 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 142 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 326 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 194 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 473 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 473 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 195 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 146 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 85 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 159 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 208 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 237 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 116 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 200 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 313 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 129 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 205 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 163 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 455 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 473 bp overlap
TBP 3 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 249 bp overlap
ChIP hESC GSE122298.TBP.hESC 160 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 127 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 180 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 292 bp overlap
TEAD1 5 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 257 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 238 bp overlap
ChIP WTC11 ENCFF502QUV 277 bp overlap
ChIP WTC11 ENCFF502QUV 400 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 260 bp overlap
TEAD4 8 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 180 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 255 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 473 bp overlap
ChIP H1 ENCFF778PAX 210 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 170 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 190 bp overlap
ChIP WTC11 ENCFF114TZS 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 221 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 248 bp overlap
TRIM28 8 datasets
ChIP HEK293 ENCFF265CEM 318 bp overlap
ChIP HEK293 ENCFF265CEM 473 bp overlap
ChIP HEK293 ENCFF582MWI 259 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 390 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 165 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 86 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 250 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 217 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 218 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 184 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 211 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 218 bp overlap
YY1 4 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 375 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 286 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 182 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 142 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 57 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF148 3 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 229 bp overlap
ChIP K562 ENCFF352SDL 354 bp overlap
ChIP K562 ENCFF352SDL 473 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 165 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 218 bp overlap
ZNF281 2 datasets
ChIP K-562 GSE121133.ZNF281.K-562 202 bp overlap
ChIP WTC11 ENCFF551GAV 240 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 109 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 473 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 75 bp overlap