chr14 : 55,583,901 55,584,140
239 bp 104 TFs 2 linked genes
This 239 bp open chromatin element is linked to KTN1 and KTN1-AS1 and is bound by 104 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
KTN1 3.7 kb Proximal Proximity
KTN1-AS1 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:55,578,901 – 55,589,140
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 130 bp overlap
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 176 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF207QHL 58 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 161 bp overlap
ATF3 1 dataset
ChIP liver ENCFF867MFZ 176 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 239 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 226 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 161 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 239 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 239 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 120 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 239 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 239 bp overlap
ELF3 2 datasets
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 160 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 123 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 197 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 153 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 227 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 239 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 217 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 220 bp overlap
FOXA1 2 datasets
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 107 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 211 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 217 bp overlap
ChIP DE DE-FOXA2-1 205 bp overlap
GATA1 11 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 175 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 178 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 204 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 87 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 239 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 207 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap
ChIP K562 ENCFF094CMK 228 bp overlap
ChIP erythroblast ENCFF867JAR 239 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 221 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 234 bp overlap
GATA2 10 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 141 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 168 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 239 bp overlap
ChIP K562 ENCFF830LLA 239 bp overlap
ChIP SH-SY5Y ENCFF485YIB 175 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 239 bp overlap
ChIP SK-N-SH ENCFF764OZD 239 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 239 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 239 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 224 bp overlap
GATA3 14 datasets
ChIP BE2C GSE65664.GATA3.BE2C 238 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 229 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 177 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 203 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 239 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 210 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 221 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 124 bp overlap
ChIP NGP GSE65664.GATA3.NGP 133 bp overlap
ChIP SH-SY5Y ENCFF475HYF 239 bp overlap
ChIP SH-SY5Y ENCFF475HYF 190 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 239 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 238 bp overlap
ChIP SK-N-SH ENCFF040SSB 239 bp overlap
GATA4 12 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 239 bp overlap
ChIP DE DE-GATA4-2 239 bp overlap
ChIP G296S GSE85628.GATA4.G296S 138 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 138 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 155 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 239 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 191 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 196 bp overlap
ChIP foregut GSE117136.GATA4.foregut 239 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 239 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 239 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 184 bp overlap
ChIP DE DE-GATA6-1 239 bp overlap
ChIP DE DE-GATA6-2 239 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 239 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 239 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 239 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 239 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 239 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 239 bp overlap
ChIP foregut GSE117136.GATA6.foregut 239 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 239 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 239 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 239 bp overlap
GFI1B 3 datasets
ChIP HEK293 ENCFF264FBS 239 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 236 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 188 bp overlap
GMEB1 1 dataset
ChIP HepG2 ENCFF434UDC 239 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 145 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 234 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 223 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 199 bp overlap
ChIP K562 ENCFF968WBH 239 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 229 bp overlap
ChIP K562 ENCFF744ALD 239 bp overlap
HES1 1 dataset
ChIP K562 ENCFF919JVU 239 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 239 bp overlap
ChIP K562 ENCFF317JJX 239 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 239 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 239 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 191 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 230 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 227 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 59 bp overlap
KMT2A 4 datasets
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 151 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 230 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 239 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 138 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 136 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 158 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 239 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 68 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 237 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 184 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 217 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 239 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 208 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 115 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 50 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 239 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 117 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 98 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 239 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 120 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 141 bp overlap
ChIP liver ENCFF485PAC 53 bp overlap
RCOR1 3 datasets
ChIP K562 ENCFF216EEJ 223 bp overlap
ChIP SK-N-SH ENCFF518EXB 239 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 200 bp overlap
REST 2 datasets
ChIP HEK293 ENCFF073DOT 239 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 195 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 55 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 143 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 239 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 189 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 239 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 239 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 209 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 239 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 239 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 239 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 239 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 239 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 239 bp overlap
SMARCC1 2 datasets
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 231 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 239 bp overlap
SMC3 1 dataset
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 98 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 84 bp overlap
SP5_Zebrafish 2 datasets
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 159 bp overlap
ChIP HEK293_dDBD GSE110277.SP5_Zebrafish.HEK293_dDBD 131 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 239 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 157 bp overlap
TAF1 4 datasets
ChIP HeLa-S3 ENCFF556LCN 238 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 155 bp overlap
ChIP SK-N-SH ENCFF630ERV 237 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 106 bp overlap
TAL1 2 datasets
ChIP CD34 GSE52924.TAL1.CD34 154 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 148 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCFF715NNJ 178 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 82 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 228 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 239 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 239 bp overlap
TRIM28 6 datasets
ChIP HEK293 ENCFF265CEM 239 bp overlap
ChIP HEK293 ENCFF582MWI 239 bp overlap
ChIP HEK293 ENCFF582MWI 178 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 239 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 239 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 239 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 152 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 152 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 143 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 239 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 239 bp overlap
YY1 4 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 205 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 239 bp overlap
ChIP liver ENCFF400MBC 88 bp overlap
ChIP liver ENCFF515BWJ 107 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 239 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 189 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 163 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 129 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 239 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 231 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 226 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCFF968PWB 239 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 120 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 239 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 239 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 239 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 239 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 212 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 80 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 171 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 239 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 117 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 239 bp overlap
ChIP HEK293 ENCFF799ATK 146 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 215 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 169 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 230 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 59 bp overlap
ZNF770 4 datasets
ChIP HEK293 ENCFF468FCG 207 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 239 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 226 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 96 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 239 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 236 bp overlap
ZSCAN21 2 datasets
ChIP HEK293 ENCFF582WUP 239 bp overlap
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 239 bp overlap
ZXDB 3 datasets
ChIP HEK293 ENCFF835SGA 224 bp overlap
ChIP HEK293 ENCFF835SGA 151 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 239 bp overlap