chr12 : 118,774,334 118,774,727
393 bp 100 TFs 1 linked gene
This 393 bp open chromatin element is linked to LINC02440 and is bound by 100 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02440 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:118,769,334 – 118,779,727
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 366 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 123 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 132 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 314 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 393 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 393 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 393 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 112 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 359 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 321 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 321 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 282 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 368 bp overlap
BRD4 18 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 349 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 393 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 197 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 393 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 277 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 268 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 221 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 393 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 393 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 393 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 393 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 393 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 102 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 393 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 213 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 393 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 197 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 199 bp overlap
ChIP WTC11 ENCFF113HIY 334 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 202 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 286 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 229 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 151 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 393 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 284 bp overlap
CTCF 4 datasets
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 283 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 114 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 102 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 125 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 195 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 192 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 191 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 138 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 366 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 258 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 393 bp overlap
ChIP neural cell ENCFF442QNK 243 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 124 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 235 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 310 bp overlap
EZH2 6 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 393 bp overlap
ChIP A673 ENCFF790MVL 312 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 393 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 379 bp overlap
ChIP neural progenitor cell ENCFF472NFV 393 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 218 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 289 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 319 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 196 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 138 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 228 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 319 bp overlap
ChIP H1 ENCFF078LED 393 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 393 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 140 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 255 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 265 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
MAX 6 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 299 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 393 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 277 bp overlap
ChIP WTC11 ENCFF223QFY 393 bp overlap
ChIP WTC11 ENCFF223QFY 293 bp overlap
MXI1 5 datasets
ChIP H1 ENCFF963FZS 337 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 251 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 228 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 393 bp overlap
ChIP neural cell ENCFF623HQN 390 bp overlap
MYC 6 datasets
ChIP H1 ENCFF794ZJT 265 bp overlap
ChIP Kelly GSE138295.MYC.Kelly 278 bp overlap
ChIP NB69 GSE138295.MYC.NB69 368 bp overlap
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 354 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 240 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 236 bp overlap
MYCN 8 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 289 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 299 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 320 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 290 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 176 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 327 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 393 bp overlap
ChIP prostate-cancer GSE117304.MYCN.prostate-cancer 256 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 139 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 374 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 131 bp overlap
NRF1 2 datasets
ChIP H1 ENCFF582PEJ 245 bp overlap
ChIP WA01 ENCSR000ECC.NRF1.WA01 132 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 261 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 287 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 283 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 393 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 161 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 210 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 203 bp overlap
ChIP H1 ENCFF566JSR 271 bp overlap
ChIP H1 ENCFF770YBQ 303 bp overlap
ChIP H1 ENCFF833NJP 198 bp overlap
ChIP neural cell ENCFF604SPB 393 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 256 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 355 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 276 bp overlap
RAD21 3 datasets
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 87 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 393 bp overlap
ChIP neural cell ENCFF564MOT 316 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 234 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 393 bp overlap
ChIP neural cell ENCFF882LXX 306 bp overlap
RFX1 9 datasets
Motif ES_0h ES_0h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 393 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 360 bp overlap
ChIP K562 ENCFF421AVO 381 bp overlap
ChIP K562 ENCFF809XVG 333 bp overlap
ChIP MCF-7 ENCFF782EZS 342 bp overlap
ChIP MCF-7 ENCFF973QAD 278 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 378 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 336 bp overlap
RFX2 1 dataset
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
RFX4 1 dataset
Motif ES_0h ES_0h-RFX4_MA0799.3 13 bp overlap
RFX5 1 dataset
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RFX7 1 dataset
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 393 bp overlap
Rfx6 1 dataset
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 393 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 393 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 327 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 145 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 249 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 375 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 326 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 3 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 321 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 303 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 204 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 393 bp overlap
ChIP neural cell ENCFF795YGY 290 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 235 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 299 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 393 bp overlap
ChIP hESC GSE69479.SOX2.hESC 198 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 370 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 273 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 214 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP macrophage_IL4 GSE47188.SPI1.macrophage_IL4 270 bp overlap
SUZ12 2 datasets
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 337 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 270 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
TAF1 5 datasets
ChIP H1 ENCFF478SZO 245 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 383 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 219 bp overlap
ChIP neural cell ENCFF468SPD 393 bp overlap
ChIP neural cell ENCFF468SPD 364 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 290 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 291 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 229 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 154 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 129 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 110 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 322 bp overlap
ChIP WTC11 ENCFF502QUV 264 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 113 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 198 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 313 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 142 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 173 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 156 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 337 bp overlap
ChIP WA01 GSE39096.YY1.WA01 209 bp overlap
ZBED4 1 dataset
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 298 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 190 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 330 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 201 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 393 bp overlap
ZNF319 1 dataset
ChIP K562 ENCFF561ZSB 124 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 61 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap