chr12 : 12,742,773 12,743,975
1,202 bp 118 TFs 5 linked genes
This 1.2 kb open chromatin element is linked to 5 target genes and is bound by 118 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
APOLD1 17.3 kb Distal Multiome
CDKN1B 25.9 kb Distal Multiome
GPR19 58.7 kb Distal Multiome
CREBL2 131.4 kb Distal Multiome
DUSP16 180.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:12,737,773 – 12,748,975
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K562 ENCFF492SKF 683 bp overlap
AR 1 dataset
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 80 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 438 bp overlap
ChIP K562 ENCFF938UXQ 247 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 272 bp overlap
BCL11A 1 dataset
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 61 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 420 bp overlap
ChIP K562 ENCFF343XWA 437 bp overlap
BHLHE40 1 dataset
ChIP K562 ENCFF923NJI 307 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 225 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 464 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 248 bp overlap
ChIP K562 ENCFF567XUT 390 bp overlap
CDK6 1 dataset
ChIP KB GSE52469.CDK6.KB 110 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 322 bp overlap
DACH1 1 dataset
ChIP K-562 ENCSR030TJP.DACH1.K-562 239 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 235 bp overlap
ChIP K562 ENCFF775HUO 529 bp overlap
EHF 1 dataset
Motif DE_72h DE_72h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_72h DE_72h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 761 bp overlap
ERF 1 dataset
Motif DE_72h DE_72h-ERF_MA0760.2 9 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 191 bp overlap
ETV1 1 dataset
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1040 bp overlap
ChIP DE DE-FOXA2-2 1130 bp overlap
FOXC2 2 datasets
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
GABPA 1 dataset
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 83 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 417 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 237 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 254 bp overlap
ChIP erythroblast ENCFF867JAR 590 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 483 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 249 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 176 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR257RKC.GATA2.K-562 181 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 347 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 195 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 360 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 244 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 1079 bp overlap
ChIP DE DE-GATA4-2 1202 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 1085 bp overlap
ChIP DE DE-GATA6-2 1202 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 359 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1083 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 278 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 418 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 398 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 931 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 328 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 265 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 427 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 405 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 322 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 319 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 323 bp overlap
ChIP K562 ENCFF744ALD 421 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 343 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 330 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 281 bp overlap
KDM1A 2 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 276 bp overlap
ChIP K562 ENCFF128TYE 439 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 231 bp overlap
L3MBTL2 3 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 319 bp overlap
ChIP K562 ENCFF320EQC 428 bp overlap
ChIP K562 ENCFF320EQC 601 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 204 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 195 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 284 bp overlap
ChIP K562 ENCFF731XJJ 174 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 245 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 322 bp overlap
MTF1 2 datasets
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
Motif DE_72h DE_72h-MTF1_MA0863.1 14 bp overlap
MZF1 3 datasets
ChIP HEK293 ENCFF683ZWN 421 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 274 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 339 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 215 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 324 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 242 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 347 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 444 bp overlap
ChIP K562 ENCFF167YID 429 bp overlap
NFIX 1 dataset
ChIP K-562 ENCSR574VJG.NFIX.K-562 212 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 51 bp overlap
NKX2-5 1 dataset
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
Nr2e3 1 dataset
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 354 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 228 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 69 bp overlap
Pgr 3 datasets
Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Motif DE_72h DE_72h-Pgr_MA2323.1 17 bp overlap
RAD51 2 datasets
ChIP K-562 ENCSR524BUE.RAD51.K-562 230 bp overlap
ChIP K562 ENCFF133ELP 319 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 197 bp overlap
ChIP K562 ENCFF248CGR 361 bp overlap
ChIP K562 ENCFF957ORK 361 bp overlap
RBPJ 1 dataset
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP K-562 GSE70482.REST.K-562 190 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 531 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 314 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 328 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1080 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1028 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 822 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 123 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 762 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1157 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 269 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 346 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 341 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 199 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 314 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 172 bp overlap
ChIP K562 ENCFF620GMX 385 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 182 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 267 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR957LDM.TRIM24.K-562 236 bp overlap
ChIP K-562 ENCSR907MZR.TRIM24.K-562 260 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tfcp2l1 1 dataset
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 193 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 434 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 300 bp overlap
YY2 1 dataset
Motif DE_72h DE_72h-YY2_MA0748.3 7 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 177 bp overlap
ZEB2 3 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 361 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 274 bp overlap
ChIP K562 ENCFF795CMH 477 bp overlap
ZIM3 1 dataset
ChIP HEK293 GSE76494.ZIM3.HEK293 235 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 457 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 234 bp overlap
ChIP K562 ENCFF361LXT 381 bp overlap
ZNF121 3 datasets
ChIP HEK293 ENCFF839FUF 441 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 464 bp overlap
ChIP HEK293 GSE76494.ZNF121.HEK293 245 bp overlap
ZNF136 1 dataset
Motif DE_72h DE_72h-ZNF136_MA1588.1 15 bp overlap
ZNF175 1 dataset
Motif DE_72h DE_72h-ZNF175_MA2332.1 9 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 341 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 444 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 236 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 502 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 180 bp overlap
ZNF707 1 dataset
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF75A 1 dataset
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
ZNF770 5 datasets
ChIP HEK293 ENCFF468FCG 364 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 402 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 287 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 276 bp overlap
ChIP HepG2 ENCFF233UVH 502 bp overlap
ZNF784 3 datasets
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap
Motif DE_60h DE_60h-ZNF784_MA1717.2 8 bp overlap
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 302 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap